[ensembl-dev] Core API problem - get_all_DBEntries

Glenn Proctor glenn at ebi.ac.uk
Fri Jan 21 15:04:45 GMT 2011


Hi Gavin

This was actually a bug in
ensembl/modules/Bio/EnsEMBL/DBSQL/DBEntryAdaptor.pm - if you get the
HEAD version of that file you should be good to go.

We're also adding more intuitive aliases for get_all_DBLinks() and
get_all_DBEntries() in release 61 (due in few weeks).

Glenn.


On Fri, Jan 21, 2011 at 11:29 AM, Oliver, Gavin
<gavin.oliver at almacgroup.com> wrote:
> Hi,
>
>
>
> I am trying to use get_all_DBEntries with a wildcard.
>
>
>
> For example:
>
>
>
> my @dbentries = @{$gene->get_all_DBEntries(“HGNC%”)};
>
>
>
>
>
> The problem is it seems to return nothing.  If I use an exact serach term
> without wildcards it is fine however.
>
>
>
> Can someone advise?
>
>
>
> Gavin
>
>
>
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