[ensembl-dev] Variant Consequence Predictor

[Stuart Meacham]

Hi list (Will!),

I have been using the Variant Consequence predictor in whole genome mode 
and have (at least one) anomalous results. For example:

Transcript: ENST00000260061

SNP Residue Major Minor AA_Replacement Consequence

rs79525962 407 C T A/P NON_SYNONYMOUS_CODING
11_76371418_C/T 407 C T	A/T NON_SYNONYMOUS_CODING

top line is data in Ensembl
second line is data (1000 Genomes) using the predictor. You can see the 
Consequence predictor shows an amino acid change (A/T) at the same 
position as Ensembl shows A/P.

Is one just wrong? And if so how do I check which one?

Cheers

Stuart