[ensembl-dev] empty gene labels for NHX gene tree

[Javier Herrero]

Hi Sébastien

The full mode should show the protein stable ID and the abbreviated species 
name, but I don't think this has ever worked for the NHX format.

We already had plans to re-write the part of the API in charge of printing 
these trees. We will prioritise this.

Javier

On Thursday 24 Feb 2011 13:20:29 Sébastien Moretti wrote:
> These other display modes are useful.
> But I don't remember how exhaustive is the full mode compared to them
> 
> > Hi Sébastien
> > 
> > No, that is not normal, thank you for reporting this.
> > 
> > Are you OK with using the other display modes (label_composite or geneID
> > for instance) until we fix this?
> > 
> > Javier
> > 
> > On Wednesday 23 Feb 2011 12:56:42 Sébastien Moretti wrote:
> >> Hi
> >> 
> >> I try to see NHX trees for some gene trees.
> >> 
> >> When "full mode" is selected I get an NHX tree without gene labels:
> >> Only duplication status and bootstraps in the NHX annotations; and
> >> nothing as leaf label, I mean nothing is written after the opened round
> >> bracket.
> >> e.g. ...(:..
> >> 
> >> Is it normal ?

-- 
Javier Herrero, PhD
Ensembl Compara Project Leader
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton
Cambridge - CB10 1SD - UK