[ensembl-dev] Biomart/martdb down?

[Premanand Achuthan]

Hi Steve

Thanks for getting back. You are right, the biomart site is alright now. 
But still have issues with mysql server.

xxx at xxx-vm:~$ mysql -uanonymous -hmartdb.ensembl.org -P5316
Welcome to the MySQL monitor.  Commands end with ; or \g.
Your MySQL connection id is 85312
Server version: 5.1.34 Source distribution

Type 'help;' or '\h' for help. Type '\c' to clear the buffer.

mysql> use vega_mart_61;
Reading table information for completion of table and column names
You can turn off this feature to get a quicker startup with -A

Database changed
mysql> use ensembl_mart_61;
Reading table information for completion of table and column names
You can turn off this feature to get a quicker startup with -A

===
I have waited here for more than 10 minutes, still it doesn't switch. 
vega_mart_61 seems to be fine, but not able to use ensembl_mart_61.

Not sure if it has to do with my vms memory. Anyway, I can still go 
ahead with the biomart service.

Thanks
Prem







On 21/02/11 23:32, steve trevanion wrote:
> Hi Prem,
>
> Ensembl does not maintain the biomart website, please see 
> http://www.biomart.org/contact.html. However their site does now 
> appear to be OK
>
> We do maintain martdb.ensembl.org and that is responding fine for me. 
> We have not had any other reports of problems, can you confirm you are 
> using port 5316 ?
>
> Regards,
>
> Steve
>
> On 21/02/2011 17:35, Premanand Achuthan wrote:
>> Hi All
>>
>> I have been trying to use biomart 
>> (http://www.biomart.org/biomart/martview/) since afternoon, and I 
>> keep getting the following message
>> 'Serious Error: Could not connect to mysql database ensembl_mart_61: 
>> DBI 
>> connect('database=ensembl_mart_61;host=dcc-qa-db.oicr.on.ca;port=3306','bm_web',...) 
>> failed: Can't connect to MySQL server on 'dcc-qa-db.oicr.on.ca' (113) 
>> at 
>> /srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Configuration/DBLocation.pm 
>> line 98'
>>
>> Also not able to connect to martdb.ensembl.org.ensembl_mart_61 
>> through mysql client.
>>
>> Anybody having similar issues?
>>
>> Thanks
>> Prem
>>
>>
>>
>> _______________________________________________
>> Dev mailing list
>> Dev at ensembl.org
>> http://lists.ensembl.org/mailman/listinfo/dev
>
>
> _______________________________________________
> Dev mailing list
> Dev at ensembl.org
> http://lists.ensembl.org/mailman/listinfo/dev

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20110222/2414213b/attachment.html>