[ensembl-dev] RNA-Seq/Illumina Human Bodymap 2.0 Data - further details ?

[Simon White]

Yes that's right, we just pick a single transcript with the highest  
read support to represent each locus / tissue. Possible alternate  
splices are shown in the intron tracks.

Simon

On 11 Feb 2011, at 16:24, Oliver Burren wrote:

> Thanks Simon thats sheds some light,
>
> As I understand it then, only the transcript with the most  
> supporting reads is displayed.
>
> O
>
>
>
>
> On 11/02/11 09:29, Simon White wrote:
>> Hi Oliver,
>> I believe the Human Bodymap gene models were built in the same was  
>> as I
>> built the zebrafish RNASeq models. There is a short summary of the
>> process used in Zebrafish in the help and documentation section of  
>> the
>> website under Gene Annotation:
>> http://www.ensembl.org/info/docs/genebuild/ 
>> zebrafish_rnaseq_annotation.html
>>
>> Hope this is useful.
>>
>> Simon White
>>
>> On 10 Feb 2011, at 14:09, Oliver Burren wrote:
>>
>>> Hi Ensembl,
>>>
>>> Are there any further details on how gene models are built from the
>>> Illumina Human Bodymap 2.0 Data ?
>>>
>>> Currently all I can find is:-
>>>
>>> Gene models built using Human xxxxx total RNA, lot xxxx, caucasian
>>> xxxx, xxxxx, Illumina Human Bodymap 2.0 Data
>>>
>>> Under the 'Configure Page' dialogue.
>>>
>>> Thanks,
>>>
>>> Olly Burren.
>>>
>>> _______________________________________________
>>> Dev mailing list
>>> Dev at ensembl.org
>>> http://lists.ensembl.org/mailman/listinfo/dev
>>
>>
>>
>