[ensembl-dev] Intron and transcript strands...

Steve Moss S.P.Moss at 2007.hull.ac.uk
Wed Feb 9 12:50:06 GMT 2011

Hi all,

Is anyone aware of a case when an intron strand could be different from the
transcript strand? I assume not, as the intron cannot be the reverse
compliment - e.g. looking for GT-AG for U2 type introns!? I'm doing some
calculations based on coordinates of the intron relative to the transcript
and am trying to think of any possible error checks that need adding!



Kindest regards,

Steve Moss, BSc (Hons)
PhD Student
Evolutionary Biology Group
Department of Biological Sciences
University of Hull
Cottingham Road
Hull, HU6 7RX
Evolution site: http://goo.gl/7ZReN
site: http://goo.gl/LzGQo
Personal site: http://stevemoss.ath.cx/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20110209/8a3c07d6/attachment.html>

More information about the Dev mailing list