[ensembl-dev] [SPAM] - Re: Transcript variation alleles - Email found in subject

[Oliver, Gavin]

How would I go about pulling the transcriptomic one?

 

________________________________

From: wmclaren at gmail.com [mailto:wmclaren at gmail.com] On Behalf Of Will
McLaren
Sent: 02 February 2011 15:27
To: Oliver, Gavin
Cc: Graham Ritchie; dev at ensembl.org
Subject: Re: [SPAM] - Re: [ensembl-dev] Transcript variation alleles -
Email found in subject

 

In this case, as Graham says, the alleles will be the genomic alleles,
since you are calling from a variation_feature object.

 

Will

On 2 February 2011 15:21, Oliver, Gavin <gavin.oliver at almacgroup.com>
wrote:

I'm using transcriptvariation->variation_feature->allele_string

 

________________________________

From: wmclaren at gmail.com [mailto:wmclaren at gmail.com] On Behalf Of Will
McLaren
Sent: 02 February 2011 15:20
To: Graham Ritchie
Cc: Oliver, Gavin; dev at ensembl.org
Subject: [SPAM] - Re: [ensembl-dev] Transcript variation alleles - Email
found in subject

 

Hi Gavin,

 

What method and object type are you using to get the alleles? It's not
clear from your email.

 

Thanks

 

Will

On 2 February 2011 15:11, Graham Ritchie <grsr at ebi.ac.uk> wrote:

Hi Gavin,

The alleles of a transcript variation always represent the genomic base
change.

Cheers,

Graham

Ensembl variation



On 2 Feb 2011, at 15:02, Oliver, Gavin wrote:

> Hi,
>
> When I pull transcript variation alleles via the API, does the allele
shown (e.g. A/T) represent the genomic base change, or the
transcriptomic one?
>
> Gavin
>
>
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>
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The contents of this message and any attachments to it are confidential
and may be legally privileged. If you have received this message in
error, you should delete it from your system immediately and advise the
sender.

 

Almac Group (UK) Limited, registered no. NI061368.  Almac Sciences
Limited, registered no. NI041550.  Almac Discovery Limited, registered
no. NI046249.  Almac Pharma Services Limited, registered no. NI045055.
Almac Clinical Services Limited, registered no. NI041905.  Almac
Clinical Technologies Limited, registered no. NI061202.  Almac
Diagnostics Limited, registered no. NI043067.  All preceding companies
are registered in Northern Ireland with a registered office address of
Almac House, 20 Seagoe Industrial Estate, Craigavon, BT63 5QD, UK.  

 

Almac Sciences (Scotland) Limited, registered in Scotland no. SC154034. 

 

Almac Clinical Services LLC, Almac Clinical Technologies LLC, Almac
Diagnostics LLC, Almac Pharma Services LLC and Almac Sciences LLC are
Delaware limited liability companies and Almac Group Incorporated is a
Delaware Corporation.  More information on the Almac Group can be found
on the Almac website: www.almacgroup.com

 

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