[ensembl-dev] Getting transcript sequence

Damian dfermin at umich.edu
Mon Aug 29 03:05:59 BST 2011


Hello.

Which function of the Transcript Class gets me the transcripts sequence correctly spliced together (ie ready for translation)?
Is it:
$trans->seq->seq()
or
$trans->spliced_seq()

The descriptions of the two functions are confusing.

Thanks,

Damian Fermin, Ph.D
Pathology Department
University of Michigan
1300 Catherine St.
Ann Arbor, MI 48109
734.615.0302
http://damianfermin.com

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