[ensembl-dev] Affymetrix Porcine probes: genomic position

[Laurent Gil]

Hi Dario,

You can find all the ensembl data on the ftp: 
http://www.ensembl.org/info/data/ftp/index.html

The pig variations are stored here: 
ftp://ftp.ensembl.org/pub/release-62/variation/sus_scrofa/
The file that might interest you is Sus_scrofa.gvf.gz 
<ftp://ftp.ensembl.org/pub/release-62/variation/sus_scrofa/Sus_scrofa.gvf.gz>.

Cheers,

Laurent


On 25/04/2011 19:23, Dario Beraldi wrote:
> Hello,
>
> I'm working with the Affymetrix Porcine chip (gene expression array 
> for pig). I would like to download the position where each probe maps 
> on the pig genome.
>
> (I can see this information is present somewhere in ENSEMBL for 
> example 
> http://www.ensembl.org/Sus_scrofa/Location/Genome?db=core;fdb=funcgen;ftype=ProbeFeature;g=ENSSSCG00000014369;id=Ssc.4978.1.S1_at;ptype=pset;r=2:129356198-129357848;t=ENSSSCT00000015699 
> but I can't figure out how to extract the genome position in batch for 
> all the probes).
>
> Many thanks!
>
> Dario
>
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