[ensembl-dev] Affymetrix Porcine probes: genomic position

Dario Beraldi dario.beraldi at ed.ac.uk
Mon Apr 25 19:23:47 BST 2011


Hello,

I'm working with the Affymetrix Porcine chip (gene expression array  
for pig). I would like to download the position where each probe maps  
on the pig genome.

(I can see this information is present somewhere in ENSEMBL for  
example  
http://www.ensembl.org/Sus_scrofa/Location/Genome?db=core;fdb=funcgen;ftype=ProbeFeature;g=ENSSSCG00000014369;id=Ssc.4978.1.S1_at;ptype=pset;r=2:129356198-129357848;t=ENSSSCT00000015699 but I can't figure out how to extract the genome position in batch for all the  
probes).

Many thanks!

Dario

-- 

Dr. Dario Beraldi
Institute of Evolutionary Biology
University of Edinburgh
West Mains Road
Edinburgh EH9 3JT
Scotland, UK


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The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.






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