[ensembl-dev] Fwd: need help

shaabana abdo shaabn13 at gmail.com
Tue Apr 19 14:01:33 BST 2011


Hi everybody

i am a ph.d student. i have a promoter sequence i want to analysis that
sequence for the transcription factors, starting and ending site for
transcription
really i do not know how to analysis promoter? i need some help . if someone
has idea or can help me i will load the sequence in the attachment

THIS IS THE SEQUENCE


HNRNPF- promoter sequence (*1126 bp*)



1      GGTACCTGAGCTCTTACGCGTTAGCCATTAGCCACCAAATCTGTGTGTTC

51     AGGTGCTCTGTGACTGAAAATCTTGCCCTCGACCTGGGTCTGAGTTACAT

101    TCTGAGGTTTGGGGGCTTCTCACACCACGGAATTTATCACCTGAGCAACT

151    TCAACCTGACAAATCCCTCCTAACGCCCTGCTCTGAGACCCCTTTAGGCG

201    GTCTCCGGAGTACTCAGTGTACCTTTTTTTTTTTTTTTTCTTTGAGACGT

251    AGTCTCGCTCTGTCGCTAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCAC

301    GCAAGCTCCGCCTCCCGGGTTCAAGCGATTCCCCTGCCTCAGCCACCCGA

351    GTGGCTGGGACTACAAGCGCGCGCCACCACGCCTGGCTAATTTTTTTGTA

401    TTTTAGTAGGGGTTTCACTATGTTGGCCAGGATGGTCTCGATTTCCCGAC

451    CGCCTGATCCGTCCGCCTCGGCCTCCCAAAGTGGTGGGATTACAGGCGTG

501    AGCCACCGCGCCCGGCCTTCAGTGTACTACTTTCCTTATTTTATTTTTTG

551    AGACAGCGCCTCGCTCTGTCGCCCAGGCTGGACGCAATGGAGCAGTCACG

601    GATCACTGCAGCCTCGACCTCCCGGGCTCAAGCGATTCTCCCGCCTTAGC

651    CTCCCAAATTACTGGGACCACAGGCTTGCGCCACCACGCCCTGCCATCGG

701    CTCTCATTTCCTTTTCCCATCCTAGTCTTCAATCAGGCGTCCTTTCGGCG

751    CACATTTCAGTGTCCTGCGGAGCTCACCAGTGTCCTTCCTCCAGGGCCTC

801    AGGGGCAGTCAGAGGGATCTTTCCCGCCGCTCCACTCCCTCCTCCTCCTC

851    CCCCTCCCCCTATCCCCTCCCCTCCCCTCCCTTCTCCTCTCCAGAAACGT

901    CCTCGCTTGTCCGCCTCCACCGCCTCCCCCGCCAGCCGTGTCGGCTCTGC

951    TCCGCGCCCAGCCGGCCAACCGGCGGCTCAGCTCTGGCGCGTCACAATGC

1001   GCCGTCGCGGCCCCGCCCCCGGACGCCGGACGCAGAAACTCCGCCCTGCC

1051   GCGGTCCTTGCGTCCTTCCGGCTCCGTCGTGGAAGCAGGACTGCGCCGCG

1101   TCTTCCTCAAGGTGGGGTTCAGATCT


thank a lot
SHAABAN
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