[ensembl-dev] Fwd: need help
shaabana abdo
shaabn13 at gmail.com
Tue Apr 19 14:01:33 BST 2011
Hi everybody
i am a ph.d student. i have a promoter sequence i want to analysis that
sequence for the transcription factors, starting and ending site for
transcription
really i do not know how to analysis promoter? i need some help . if someone
has idea or can help me i will load the sequence in the attachment
THIS IS THE SEQUENCE
HNRNPF- promoter sequence (*1126 bp*)
1 GGTACCTGAGCTCTTACGCGTTAGCCATTAGCCACCAAATCTGTGTGTTC
51 AGGTGCTCTGTGACTGAAAATCTTGCCCTCGACCTGGGTCTGAGTTACAT
101 TCTGAGGTTTGGGGGCTTCTCACACCACGGAATTTATCACCTGAGCAACT
151 TCAACCTGACAAATCCCTCCTAACGCCCTGCTCTGAGACCCCTTTAGGCG
201 GTCTCCGGAGTACTCAGTGTACCTTTTTTTTTTTTTTTTCTTTGAGACGT
251 AGTCTCGCTCTGTCGCTAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCAC
301 GCAAGCTCCGCCTCCCGGGTTCAAGCGATTCCCCTGCCTCAGCCACCCGA
351 GTGGCTGGGACTACAAGCGCGCGCCACCACGCCTGGCTAATTTTTTTGTA
401 TTTTAGTAGGGGTTTCACTATGTTGGCCAGGATGGTCTCGATTTCCCGAC
451 CGCCTGATCCGTCCGCCTCGGCCTCCCAAAGTGGTGGGATTACAGGCGTG
501 AGCCACCGCGCCCGGCCTTCAGTGTACTACTTTCCTTATTTTATTTTTTG
551 AGACAGCGCCTCGCTCTGTCGCCCAGGCTGGACGCAATGGAGCAGTCACG
601 GATCACTGCAGCCTCGACCTCCCGGGCTCAAGCGATTCTCCCGCCTTAGC
651 CTCCCAAATTACTGGGACCACAGGCTTGCGCCACCACGCCCTGCCATCGG
701 CTCTCATTTCCTTTTCCCATCCTAGTCTTCAATCAGGCGTCCTTTCGGCG
751 CACATTTCAGTGTCCTGCGGAGCTCACCAGTGTCCTTCCTCCAGGGCCTC
801 AGGGGCAGTCAGAGGGATCTTTCCCGCCGCTCCACTCCCTCCTCCTCCTC
851 CCCCTCCCCCTATCCCCTCCCCTCCCCTCCCTTCTCCTCTCCAGAAACGT
901 CCTCGCTTGTCCGCCTCCACCGCCTCCCCCGCCAGCCGTGTCGGCTCTGC
951 TCCGCGCCCAGCCGGCCAACCGGCGGCTCAGCTCTGGCGCGTCACAATGC
1001 GCCGTCGCGGCCCCGCCCCCGGACGCCGGACGCAGAAACTCCGCCCTGCC
1051 GCGGTCCTTGCGTCCTTCCGGCTCCGTCGTGGAAGCAGGACTGCGCCGCG
1101 TCTTCCTCAAGGTGGGGTTCAGATCT
thank a lot
SHAABAN
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