[ensembl-dev] problem installing ensembl_compara_61

Jeff Hussmann jeff.hussmann at gmail.com
Wed Apr 13 06:43:59 BST 2011


Hello all -

I am trying to install a local mysql copy of ensembl_compara_61. Everything
goes fine until my script attempts to import the file
peptide_align_feature_mus_musculus_57.txt into mysql (as part of executing
the command "mysqlimport -u root --password=$password --fields_escaped_by=\\
$database -L $base_directory/$database/*.txt #>> $log_file_name") at which
point I get the error message

"mysqlimport: Error: 1016, Can't open file:
'./ensembl_compara_61/peptide_align_feature_mus_musculus_57.frm' (errno:
24), when using table: peptide_align_feature_mus_musculus_57".

Every peptide_align_feature_*.txt alphabetically before mus_musculus imports
without complaint (and installation of ensembl_compara_60 several months ago
on a different machine went smoothly).

Any idea what is going wrong?

 - Jeff
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