[ensembl-dev] Conservation_scores ?
sebastien.moretti at unil.ch
Wed Sep 29 14:29:42 BST 2010
> No, the conservation scores are calculated from the genomic alignments.
> For closely related subtrees in the MCoffee genetree alignments, there
> are SiteWise_dNdS values available calculated using SLR (Massingham et
> There is also a table of "alignment scores" in
> protein_tree_member_score, but those are alignment quality/uncertainty
> measures, not conservation measures.
I didn't want to talk about conservation measures but alignment quality,
In protein_tree_member_score table, do you mean MCoffee scores per
residue (score_ASCII output) ?
> Albert Vilella.
> On Wed, 2010-09-29 at 14:53 +0200, Sébastien Moretti wrote:
>> does ensembl_compara_59.conservation_scores table contain scores related
>> to MCoffee family alignments ?
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