[ensembl-dev] Conservation_scores ?

[Albert Vilella]

No, the conservation scores are calculated from the genomic alignments.

For closely related subtrees in the MCoffee genetree alignments, there
are SiteWise_dNdS values available calculated using SLR (Massingham et
al.).

There is also a table of "alignment scores" in
protein_tree_member_score, but those are alignment quality/uncertainty
measures, not conservation measures.

Cheers,

Albert Vilella.

On Wed, 2010-09-29 at 14:53 +0200, Sébastien Moretti wrote:
> Hi
> 
> does ensembl_compara_59.conservation_scores table contain scores related 
> to MCoffee family alignments ?
> 
> Regards
>