[ensembl-dev] Conservation_scores ?

Albert Vilella avilella at ebi.ac.uk
Wed Sep 29 14:02:59 BST 2010

No, the conservation scores are calculated from the genomic alignments.

For closely related subtrees in the MCoffee genetree alignments, there
are SiteWise_dNdS values available calculated using SLR (Massingham et

There is also a table of "alignment scores" in
protein_tree_member_score, but those are alignment quality/uncertainty
measures, not conservation measures.


Albert Vilella.

On Wed, 2010-09-29 at 14:53 +0200, Sébastien Moretti wrote:
> Hi
> does ensembl_compara_59.conservation_scores table contain scores related 
> to MCoffee family alignments ?
> Regards

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