[ensembl-dev] Conservation_scores ?
Albert Vilella
avilella at ebi.ac.uk
Wed Sep 29 14:02:59 BST 2010
No, the conservation scores are calculated from the genomic alignments.
For closely related subtrees in the MCoffee genetree alignments, there
are SiteWise_dNdS values available calculated using SLR (Massingham et
al.).
There is also a table of "alignment scores" in
protein_tree_member_score, but those are alignment quality/uncertainty
measures, not conservation measures.
Cheers,
Albert Vilella.
On Wed, 2010-09-29 at 14:53 +0200, Sébastien Moretti wrote:
> Hi
>
> does ensembl_compara_59.conservation_scores table contain scores related
> to MCoffee family alignments ?
>
> Regards
>
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