[ensembl-dev] Location view with auto load of remote URL data?

Dr James A Smith js5 at sanger.ac.uk
Tue Sep 28 20:46:13 BST 2010


  On 28/09/2010 14:22, Ken Youens-Clark wrote:
> I have a situation where a collaborator would like to make a GFF file of annotations and have their users go directly to a Location view in Gramene with the GFF loaded up as a new track.  Is something like this currently possible with the Ensembl code, e.g., could they generate a URL like so:
>
> 	http://www.gramene.org/Oryza_sativa/Location/View?r=1:1-100000;contigviewbottom=url:http://brie.cshl.edu/kyc/rice_3514.gff=normal
>
> And see that file in the "url" arg (which actually exists and will display just fine if I upload it) automatically fetched and loaded for the user?
Ken,

See the blog post at: 
http://ensembl.blogspot.com/2008/11/linking-in-to-ensembl.html it's 
slightly more complicated than your email above as you have to indicate 
which of the two panels you are attaching the track to, so:

     
http://www.gramene.org/Oryza_sativa/Location/View?r=1:1-100000;contigviewbottom=url:http://brie.cshl.edu/kyc/rice_3514.gff=normal 


works

James


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20100928/c002dcb9/attachment.html>


More information about the Dev mailing list