[ensembl-dev] Ensembl Release 60 - summary of declarations of intentions

[Julien Roux]

  Thanks Amy for the quick answer, but I was referring to the step of 
building of family trees for ncRNAs ("Gene Trees")
For example:
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?g=ENSG00000194717;r=14%3A101495971-101496051;t=ENST00000349529

This is done only since Ensembl 58 and the summary of intentions mentioned:
>    * ncRNA predictions classified by RFAM ids
>    * Infernal 1.0 alignments
>    * TreeBest MMmerge trees using a combination of NJ and ML on genomic
> context alignment and secondary structure models (raxml ss) 
Is this correct? Is it detailled somewhere in the documentation?
Thanks for your help
Julien


Le 21.09.10 11:36, at6 at sanger.ac.uk a écrit :
> Dear Julien,
>
> Yes, there is documentation on the Ensembl website detailing how ncRNAs
> are annotated:
>
> http://www.ensembl.org/info/docs/genebuild/ncrna.html
>
> Hope that help!
>
> Regards,
> Amy
>
>
>>    Dear Ensembl team
>>> - Updated build of ncRNA trees
>> Is there a documentation concerning how the trees are built for ncRNA
>> genes (for example miRNAs)?
>>
>> Thanks a lot
>> Julien
>>
>> --
>> Julien Roux, PhD
>> http://www.unil.ch/dee/page38327.html
>> Keller group, Department of Ecology and Evolution
>> Biophore, University of Lausanne, 1015 Lausanne, Switzerland
>> tel: +41 21 692 4221    fax: +41 21 692 4165
>>
>>
>> _______________________________________________
>> Dev mailing list
>> Dev at ensembl.org
>> http://lists.ensembl.org/mailman/listinfo/dev
>>
>
>
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-- 
Julien Roux, PhD
http://www.unil.ch/dee/page38327.html
Keller group, Department of Ecology and Evolution
Biophore, University of Lausanne, 1015 Lausanne, Switzerland
tel: +41 21 692 4221    fax: +41 21 692 4165