[ensembl-dev] EPO generated ancestral genome ever used by ensembl browser?

[Sharon Wei]

  Thanks, Javier.

Sharon

On 11/3/10 5:18 AM, Javier Herrero wrote:
> Hi Sharon
>
> Yes, the ancestral sequences are (can be) displayed on the gene sequence view,
> alignment view (both text and graphical displays) from the Location tab and
> the phylogenetic context view in the SNP tab.
>
> In the MULTI.ini file, you need an entry for the ancestral DB in the
> [databases] section:
>
> [databases]
> DATABASE_CORE    = ensembl_ancestral_%
> DATABASE_COMPARA = ensembl_compara_%
> DATABASE_GO      = ensembl_ontology_%
>
> On a related note, the ancestral sequences are the basis of the ancestral
> allele calls for the human SNPs in the forthcoming dbSNP release.
>
> Javier
>
> On Monday 01 Nov 2010 19:14:42 Sharon Wei wrote:
>>    Dear Ensembl team,
>>
>> I have an ancestral genome created from running EPO pipeline. I am
>> curious whether ancestral core dbs are ever used in any of the views on
>> ensembl genome browser. If yes, how should I configure the web server to
>> connect to the ancestral db?
>>
>> Thanks,
>>
>>
>> Sharon
>> Cold Spring Harbor Labs
>>
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