[Dev] lavToAxt
ambrose andongabo (RRes-Roth)
ambrose.andongabo at bbsrc.ac.uk
Tue Jul 27 17:37:27 BST 2010
Dear all ,
I downloaded lav2axt because I could not find lavToAxt. The parameter list for the lav2axt I downloaded is as follows
lav2axt: usage: lav-file human-genomic-seq [N=region-name] [D=cdb-directory] [F=fasta-directory]
and that of lavToAxt used in ensembl-compara is as follows
system($self->lavToAxt, $lav_file, $query_nib_dir, $target_nib_dir, $axt_file)
The problem I have is that I get an error while running chain-net. I will be please if somebody can tell me where I can get the executable for lavToAxt .
Many thanks in advance
thanks
Ambrose
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