[ensembl-announce] Ensembl Genomes release 12 biomaRt availability
dstaines at ebi.ac.uk
Tue Jan 3 22:28:57 GMT 2012
It looks like our normal post-release mail to the biomart.org people to
let them know about a new set of marts has not gone through, so I'll
give them a shout. I can't help you on on a biomaRt workaround though...
On 01/03/2012 06:01 PM, Cook, Malcolm wrote:
> I am hoping to access the latest S. pombe biomart (http://fungi.ensembl.org/biomart/martview/) using the R wrapper library "biomaRt"
> I believe the mart must be registered with the biomart service registry for this to be possible, but, currently I don't see fungi_mart_12 or fungi_sequence_mart_12 among http://www.biomart.org/biomart/martservice?type=registry
> Since I'm unsure where lies the responsibility for this, I'm cc:ing mart-dev and the biomaRt package developer in this inquiry.
> Can someone you please advise when or whether this latest S Pombe will be registered with biomart?
> And, perhaps there is an interim workaround allowing me to use bioconductor's biomaRt package with this resource in absence of it being registered?
> Cheers and Thanks,
> ~Malcolm Cook
>> -----Original Message-----
>> From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On
>> Behalf Of Dan Staines
>> Sent: Saturday, December 24, 2011 7:15 AM
>> To: Giulietta
>> Cc: announce at ensembl.org; dev at ensembl.org; eg_internal at ebi.ac.uk
>> Subject: Re: [ensembl-dev] [Eg_internal] Ensembl Genomes release 12
>> On 12/16/2011 02:48 PM, Giulietta wrote:
>>> /Note, EG 12 will be available on ftp next week./
>> We are happy to announce the availability of FTP data for EG12, and
>> apologise for the late running of this service.
>> Seasons greetings,
>> Dan Staines, PhD Ensembl Genomes Technical Coordinator
>> EMBL-EBI Tel: +44-(0)1223-492507
>> Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
>> Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
>> Dev mailing list Dev at ensembl.org
>> List admin (including subscribe/unsubscribe):
>> Ensembl Blog: http://www.ensembl.info/
Dan Staines, PhD Ensembl Genomes Technical Coordinator
EMBL-EBI Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
More information about the Announce