[ensembl-announce] Ensembl Genomes release 12 biomaRt availability

[Dan Staines]

It looks like our normal post-release mail to the biomart.org people to 
let them know about a new set of marts has not gone through, so I'll 
give them a shout. I can't help you on on a biomaRt workaround though...

On 01/03/2012 06:01 PM, Cook, Malcolm wrote:
> Hi,
>
> I am hoping to access the latest S. pombe biomart (http://fungi.ensembl.org/biomart/martview/) using the R wrapper library "biomaRt"
>
> I believe the mart must be registered with the biomart service registry for this to be possible, but, currently I don't see fungi_mart_12 or fungi_sequence_mart_12 among  http://www.biomart.org/biomart/martservice?type=registry
>
> Since I'm unsure where lies the responsibility for this, I'm cc:ing mart-dev and the biomaRt package developer in this inquiry.
>
> Can someone you please advise when or whether this latest S Pombe will be registered with biomart?
>
> And, perhaps there is an interim workaround allowing me to use bioconductor's  biomaRt package with this resource in absence of it being registered?
>
> Cheers and Thanks,
>
> ~Malcolm Cook
>
>
>> -----Original Message-----
>> From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On
>> Behalf Of Dan Staines
>> Sent: Saturday, December 24, 2011 7:15 AM
>> To: Giulietta
>> Cc: announce at ensembl.org; dev at ensembl.org; eg_internal at ebi.ac.uk
>> Subject: Re: [ensembl-dev] [Eg_internal] Ensembl Genomes release 12
>>
>>
>>
>> On 12/16/2011 02:48 PM, Giulietta wrote:
>>>
>>> /Note, EG 12 will be available on ftp next week./
>>
>> We are happy to announce the availability of FTP data for EG12, and
>> apologise for the late running of this service.
>>
>> Seasons greetings,
>>
>> Dan.
>>
>> --
>> Dan Staines, PhD               Ensembl Genomes Technical Coordinator
>> EMBL-EBI                       Tel: +44-(0)1223-492507
>> Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
>> Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/
>>
>> _______________________________________________
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-- 
Dan Staines, PhD               Ensembl Genomes Technical Coordinator
EMBL-EBI                       Tel: +44-(0)1223-492507
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/