[ensembl-dev] Fwd: Ensembl VEP: FASTA gzip to bgzip conversion failed
Rishi Nag
rishi at ebi.ac.uk
Mon Apr 11 14:53:43 BST 2016
That looks good, you should be able to proceed
Regards
Rishi
On 11/04/2016 13:57, Platon workaccount wrote:
> perl biodbhts/t/00_load.t
>
> 1..3
> ok 1 - use Bio::DB::HTS;
> ok 2 - use Bio::DB::HTS::Tabix;
> ok 3 - use Bio::DB::HTS::Tabix::Iterator;
>
> пн, 11 апр. 2016 г. в 15:41, Rishi Nag <rishi at ebi.ac.uk <mailto:rishi at ebi.ac.uk>>:
>
>
> Hi
>
> OK - there are some further files that should be moved:
>
> Can you try
> mv ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/HTS.* ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB
>
> and then let me know how it goes?
>
> Regards
>
> Rishi
>
> On 10/04/2016 20:38, Platon workaccount wrote:
> > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio$ ls
> > DB HTS.c HTS.o HTS.pm HTS.xs
> >
> > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB$ ls
> > HTS
> >
> > ~/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/DB/HTS$ ls
> > Alignment.pm AlignWrapper.pm Constants.pm Faidx.c Faidx.o Faidx.pm Faidx.xs FetchIterator.pm Pileup.pm PileupWrapper.pm Query.pm ReadIterator.pm
> > Segment.pm Tabix Tabix.pm Target.pm VCF.pm
>
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