[ensembl-dev] Strange Ensembl/RefSeq VEP annotation for variant

Thu Dec 10 16:51:43 GMT 2015

Hi Svein,

We started calculating this information in release79, so don't have it 
for GRCh37 as the gene set was frozen in release75. Many of these 
difference should have been resolved with the improvements in the GRCh38 
assembly.

The REFSEQ_MATCH 'rseq_cds_mismatch' flag will be most useful to you - 
this signifies a mismatch in the CDS of the RefSeq model, though it does 
not specify the type.

There are 232 RefSeq transcripts in our current GRCh38 release which 
have indels in the CDS with respect to the ensembl transcript- I have 
attached an export of the information we hold in case this is useful. 
I've also attached an example script you could use to extract the full 
information by transcript. We will look at how best to add this 
additional detail to VEP .

All the best,

Sarah

On 08/12/2015 15:29, Svein Tore Koksrud Seljebotn wrote:
> Hi again,
>
> thanks for your reply! This clears things up and for our use case we 
> need to solve this somehow.
>
> It would be nice if we somehow could get indication of this 
> information. I've looked into the output from VEP, and if I understand 
> correctly, the REFSEQ_MATCH's "rseq_ens_no_match" flag can get us near 
> to flagging these kind of transcripts. However, this will include SNV 
> differences and not only indel (not to mention UTR differences). In 
> our case we don't care about the SNV differences, but the indels, 
> potentally causing frameshifts, are important to flag since the cDNA 
> and amino acid codons can be wrong.
>
> From the release notes of Release 79, under "Transcript attributes for 
> Refseq-genomic-to-mRNA comparison (Human)" [1], it says the following:
>
> "Transcripts that do not have a perfect match between the mRNA and the 
> genomic sequence will get additional attributes to define what regions 
> (5' UTR, CDS, 3' UTR, or 'whole transcript' if there is no CDS 
> defined) do not align perfectly, along with a summary of the 
> information in the alignment (match,mismatch, indel count, total indel 
> length)."
>
> Is it possible to get this summary information from either VEP or 
> BioMart somehow? Or if it would be possible to add a new flag 
> indicating whether it's indel or snv differences. Either of these 
> sources (ideally VEP), would go a long way to solve our problems, as 
> we can then flag transcripts with indel differences.
>
>
> Thanks again,
> Svein Tore Koksrud Seljebotn
>
>
> [1] http://www.ensembl.org/info/website/news.html?id=79#cat-genebuild
>
> >Hi Svein,
> >
> >In Ensembl, our annotation is based on the reference genome but RefSeq
> >transcripts can differ from the reference which causes problems like
> >this in a occasional cases.
> >In this instance, the reference has a single base deletion with respect
> >to the RefSeq transcript. The absense of the base in the reference has
> >caused the Ensembl transcript to have a 2 base intron within what is a
> >contiguous exon in ReSeq - this accounts for the 3 base difference
> >between the transcripts. The RefSeq/reference missmatch also causes the
> >problems you observe for the RefSeq analysis.
> >
> >If you look at position 3124 it in the alignment between the two
> >transcripts, you can see the Ensembl transcript has a 3 base deletion
> >with respect to the RefSeq transcript:
> >
> >http://grch37.ensembl.org/Homo_sapiens/Transcript/Similarity/Align?db=core;extdb=refseq_mrna;g=ENSG00000090006;r=19:41099072-41135725;sequence=NM_003573.2;t=ENST00000204005 
>
> >
> >If you look at Intron 24-25 on the Exon view you can see the extra
> >intron this introduces:
> >
> >http://grch37.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;extdb=refseq_mrna;g=ENSG00000090006;r=19:41099072-41135725;sequence=NM_003573.2;t=ENST00000204005 
>
> >
> >The GRCh37 site uses an old gene set, but for more recent sets we hold
> >information on when the RefSeq transcript differs from the Ensembl
> >transcript and report such discrepancies with command line VEP. We are
> >seeking to resolve this problem.
> >
> >Best wishes,
> >
> >Sarah
> >
> >
> >On 02/12/2015 11:55, Svein Tore Koksrud Seljebotn wrote:
> >> Hi,
> >>
> >> we encountered one variant that gives a bit confusing annotation
> >> output from VEP (GRCh37, release 82).
> >>
> >> The variant is: 19:41133005 G>A (rs200607327).
> >>
> >> If it's still available, an online VEP annotation can be found here:
> >> 
> http://grch37.ensembl.org/Homo_sapiens/Tools/VEP/Results?db=core;tl=1Vp8p7UidQSVCQfB-1297423 
>
> >> .
> >>
> >>
> >> We use Refseq transcript output for NM_003573.2, and got the 
> following:
> >>
> >> NM_003573.2:c.4200G>A |NP_003564.2:p.Met1400Ile | ATG/ATA
> >>
> >> For the corresponding Ensembl transcript ENST00000204005 [1], we get
> >> the following:
> >>
> >> ENST00000204005.9:c.4198G>A | ENSP00000204005.9:p.Gly1400Arg | GGG/AGG
> >>
> >> In dbSNP and other databases, the correct cDNA position for the RefSeq
> >> transcript for this variant is 4201, not 4200.
> >>
> >> So I have two questions:
> >>
> >> 1. Why is there a three base difference between the two transcripts
> >> (4201 vs 4198)?
> >>
> >> 2. Is there something going wrong in the calculation of the RefSeq
> >> data? Note the frameshift for the codons, resulting in wrong protein
> >> as well.
> >>
> >>
> >> Best regards,
> >> Svein Tore Koksrud Seljebotn
> >>
> >>
> >> [1]
> >> 
> http://grch37.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000090006;r=19:41099072-41135725;t=ENST00000204005;tl=1Vp8p7UidQSVCQfB-1297423
> >>
> >
>
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Imperfect match for CDS. Length: 1001, match bp: 993, mismatch bp: 6, indel count: 1, total indel length: 2. Stable id: NM_001177519.2, RefSeq accession: NM_001177519.2 CIGAR: 952M2D47M, MD: MD:Z:20C411G158A18G95C113A131^CT47
Imperfect match for CDS. Length: 1002, match bp: 974, mismatch bp: 22, indel count: 2, total indel length: 6. Stable id: NM_005039.3, RefSeq accession: NM_005039.3 CIGAR: 253M3D366M3D377M, MD: MD:Z:27C76G12C17C7A2T104A1^ACA14G19G26C8T58A114C5G2T8T47C8A46^ACA16T1G154C21G181
Imperfect match for CDS. Length: 1064, match bp: 1064, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_020469.2, RefSeq accession: NM_020469.2 CIGAR: 260M1I804M, MD: MD:Z:1064
Imperfect match for CDS. Length: 1072, match bp: 1071, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001164279.1, RefSeq accession: NM_001164279.1 CIGAR: 307M1D764M, MD: MD:Z:307^G764
Imperfect match for CDS. Length: 109, match bp: 108, mismatch bp: 1, indel count: 1, total indel length: 353. Stable id: NM_022551.2, RefSeq accession: NM_022551.2 CIGAR: 103M353I6M, MD: MD:Z:108G
Imperfect match for CDS. Length: 1092, match bp: 1092, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_001256647.1, RefSeq accession: NM_001256647.1 CIGAR: 223M3I869M, MD: MD:Z:1092
Imperfect match for CDS. Length: 1099, match bp: 1096, mismatch bp: 2, indel count: 1, total indel length: 1. Stable id: NM_001122636.1, RefSeq accession: NM_001122636.1 CIGAR: 1084M1D14M, MD: MD:Z:1080A3^G8T5
Imperfect match for CDS. Length: 1116, match bp: 1116, mismatch bp: 0, indel count: 1, total indel length: 783. Stable id: NM_001282490.1, RefSeq accession: NM_001282490.1 CIGAR: 348M783I768M, MD: MD:Z:1116
Imperfect match for CDS. Length: 1124, match bp: 1122, mismatch bp: 0, indel count: 1, total indel length: 2. Stable id: XM_011546744.1, RefSeq accession: XM_011546744.1 CIGAR: 1055M2D67M, MD: MD:Z:1055^GT67
Imperfect match for CDS. Length: 114, match bp: 110, mismatch bp: 4, indel count: 1, total indel length: 687. Stable id: NM_002124.3, RefSeq accession: NM_002124.3 CIGAR: 100M687I14M, MD: MD:Z:36G4T42G12A16
Imperfect match for CDS. Length: 1143, match bp: 1139, mismatch bp: 1, indel count: 1, total indel length: 3. Stable id: NM_017680.4, RefSeq accession: NM_017680.4 CIGAR: 111M3D1029M, MD: MD:Z:111^GAT1001C27
Imperfect match for CDS. Length: 1147, match bp: 1138, mismatch bp: 9, indel count: 7, total indel length: 2556. Stable id: NM_001199455.1, RefSeq accession: NM_001199455.1 CIGAR: 6M69I17M187I7M556I7M108I10M772I9M861I77M3I1014M, MD: MD:Z:9T0C1T6T2C12A3T9A4G1092
Imperfect match for CDS. Length: 1151, match bp: 1151, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: XM_011528477.1, RefSeq accession: XM_011528477.1 CIGAR: 180M1I971M, MD: MD:Z:1151
Imperfect match for CDS. Length: 1173, match bp: 1167, mismatch bp: 0, indel count: 6, total indel length: 6. Stable id: XM_005266194.2, RefSeq accession: XM_005266194.2 CIGAR: 509M1D162M1D39M1D39M1D39M1D244M1D135M, MD: MD:Z:509^C162^C39^C39^C39^C244^C135
Imperfect match for CDS. Length: 1185, match bp: 1182, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_000278.3, RefSeq accession: NM_000278.3 CIGAR: 1140M3D42M, MD: MD:Z:1140^GGC42
Imperfect match for CDS. Length: 1191, match bp: 1191, mismatch bp: 0, indel count: 1, total indel length: 93. Stable id: NM_005803.2, RefSeq accession: NM_005803.2 CIGAR: 627M93I564M, MD: MD:Z:1191
Imperfect match for CDS. Length: 1200, match bp: 1200, mismatch bp: 0, indel count: 1, total indel length: 3490. Stable id: NM_004745.4, RefSeq accession: NM_004745.4 CIGAR: 1199M3490I1M, MD: MD:Z:1200
Imperfect match for CDS. Length: 1219, match bp: 1217, mismatch bp: 2, indel count: 3, total indel length: 3429. Stable id: NM_001277161.1, RefSeq accession: NM_001277161.1 CIGAR: 1201M278I9M1950I8M1201I1M, MD: MD:Z:1201T7C9
Imperfect match for CDS. Length: 1230, match bp: 1227, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_003989.3, RefSeq accession: NM_003989.3 CIGAR: 1121M3D106M, MD: MD:Z:1121^GGC106
Imperfect match for CDS. Length: 12469, match bp: 12266, mismatch bp: 203, indel count: 16, total indel length: 3071. Stable id: NM_002457.3, RefSeq accession: NM_002457.3 CIGAR: 4824M408I451M2010I151M66I69M3I992M30I1479M29I8M38I22M68I28M68I13M68I10M68I43M68I15M44I3M23I19M68I1384M12I2958M, MD: MD:Z:4820C461A42A9G0T0A4A0C1A19A6A14C5T18C27T12A6A0T4A17C47A9G0A0A4A0C5T16C68C44A23C1T24T2A10A4C1A38T26A0T12G24A30C0T124A3G0T0A5C5T18T16C7T87C22C44A0T18A27A10C2G0T0A5C0T23T42A0T12G25T29C11T38T13A43T21C44A13G9C2A41A0T91C37G0T0A5C0T21C8A36C11T79C44A13G9C44A0T91C26T9G8C1A3G61A23C1T42A0T68C11T57T21C44A13G9C44A0T68C22C44A0T91C37G0T0A5C0T21C9A28A8A0T1A43A25C1A10T9A50T21C44A0T69T21C26T9G8C1A3G85C37G0T0A5C0T21C8A36C11T57T21C44A13G9C44A0T91C26T9G8C1A3G15G78A27T8C1A3G61A0T0T3G63C11T79C17G30G0T2T19A23A5A3G0T0A5G0T18A12G36T2T8G2992
Imperfect match for CDS. Length: 12507, match bp: 12507, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_015120.4, RefSeq accession: NM_015120.4 CIGAR: 35M3I12472M, MD: MD:Z:12507
Imperfect match for CDS. Length: 1254, match bp: 1251, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_003987.3, RefSeq accession: NM_003987.3 CIGAR: 1209M3D42M, MD: MD:Z:1209^GGC42
Imperfect match for CDS. Length: 12660, match bp: 12630, mismatch bp: 30, indel count: 11, total indel length: 3558. Stable id: NM_003890.2, RefSeq accession: NM_003890.2 CIGAR: 3396M948I12M111I10M629I13M164I9M341I10M204I30M897I15M128I7M53I7M16I10M67I9141M, MD: MD:Z:3399A0G17A3A1T4A5G1T4A2T10C0C0C0C15C0G7A4T18A3C328A66G317T87T148C121T0G11C283C83C7693
Imperfect match for CDS. Length: 127, match bp: 123, mismatch bp: 4, indel count: 5, total indel length: 979. Stable id: NM_001035003.1, RefSeq accession: NM_001035003.1 CIGAR: 85M231I8M4I18M663I6M30I8M51I2M, MD: MD:Z:105T4G14G0C
Imperfect match for CDS. Length: 1276, match bp: 1270, mismatch bp: 6, indel count: 5, total indel length: 263. Stable id: NM_017419.2, RefSeq accession: NM_017419.2 CIGAR: 1236M23I14M80I4M27I10M121I4M12I8M, MD: MD:Z:1240C0T2C1A0G23C4
Imperfect match for CDS. Length: 1291, match bp: 1290, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001164280.1, RefSeq accession: NM_001164280.1 CIGAR: 526M1D764M, MD: MD:Z:526^G764
Imperfect match for CDS. Length: 1291, match bp: 1290, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001164277.1, RefSeq accession: NM_001164277.1 CIGAR: 526M1D764M, MD: MD:Z:526^G764
Imperfect match for CDS. Length: 1291, match bp: 1290, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001467.5, RefSeq accession: NM_001467.5 CIGAR: 526M1D764M, MD: MD:Z:526^G764
Imperfect match for CDS. Length: 1299, match bp: 1298, mismatch bp: 1, indel count: 1, total indel length: 318. Stable id: NM_138352.1, RefSeq accession: NM_138352.1 CIGAR: 330M318I969M, MD: MD:Z:1028T270
Imperfect match for CDS. Length: 1299, match bp: 1296, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_003990.3, RefSeq accession: NM_003990.3 CIGAR: 1190M3D106M, MD: MD:Z:1190^GGC106
Imperfect match for CDS. Length: 135, match bp: 135, mismatch bp: 0, indel count: 1, total indel length: 169. Stable id: NM_004485.3, RefSeq accession: NM_004485.3 CIGAR: 4M169I131M, MD: MD:Z:135
Imperfect match for CDS. Length: 135, match bp: 135, mismatch bp: 0, indel count: 1, total indel length: 125. Stable id: NM_001098722.1, RefSeq accession: NM_001098722.1 CIGAR: 4M125I131M, MD: MD:Z:135
Imperfect match for CDS. Length: 135, match bp: 135, mismatch bp: 0, indel count: 1, total indel length: 125. Stable id: NM_001098721.1, RefSeq accession: NM_001098721.1 CIGAR: 4M125I131M, MD: MD:Z:135
Imperfect match for CDS. Length: 1357, match bp: 1356, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001164278.1, RefSeq accession: NM_001164278.1 CIGAR: 526M1D830M, MD: MD:Z:526^G830
Imperfect match for CDS. Length: 1377, match bp: 1377, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_001271870.1, RefSeq accession: NM_001271870.2 CIGAR: 831M3I546M, MD: MD:Z:1377
Imperfect match for CDS. Length: 1383, match bp: 1381, mismatch bp: 2, indel count: 1, total indel length: 484. Stable id: NM_003185.3, RefSeq accession: NM_003185.3 CIGAR: 8M484I1375M, MD: MD:Z:0A2T1379
Imperfect match for CDS. Length: 1383, match bp: 1383, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_007121.5, RefSeq accession: NM_007121.5 CIGAR: 514M3I869M, MD: MD:Z:1383
Imperfect match for CDS. Length: 1395, match bp: 1390, mismatch bp: 5, indel count: 1, total indel length: 3. Stable id: NM_001128590.3, RefSeq accession: NM_001128590.3 CIGAR: 15M3I1380M, MD: MD:Z:114T19A79A1164A7A7
Imperfect match for CDS. Length: 1395, match bp: 1390, mismatch bp: 5, indel count: 1, total indel length: 3. Stable id: NM_001128590.3, RefSeq accession: NM_001128590.3 CIGAR: 15M3I1380M, MD: MD:Z:114T19A79A1164A7A7
Imperfect match for CDS. Length: 1408, match bp: 1402, mismatch bp: 6, indel count: 2, total indel length: 134. Stable id: NM_006510.4, RefSeq accession: NM_006510.4 CIGAR: 747M51I17M83I644M, MD: MD:Z:750C9A5A2G0G7C629
Imperfect match for CDS. Length: 1418, match bp: 1418, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: XM_011546264.1, RefSeq accession: XM_011546264.1 CIGAR: 1164M1I254M, MD: MD:Z:1418
Imperfect match for CDS. Length: 1435, match bp: 1435, mismatch bp: 0, indel count: 2, total indel length: 2. Stable id: XM_011543810.1, RefSeq accession: XM_011543810.1 CIGAR: 399M1I539M1I497M, MD: MD:Z:1435
Imperfect match for CDS. Length: 1440, match bp: 1439, mismatch bp: 1, indel count: 1, total indel length: 3. Stable id: NM_181844.3, RefSeq accession: NM_181844.3 CIGAR: 701M3I739M, MD: MD:Z:1037T402
Imperfect match for CDS. Length: 1449, match bp: 1437, mismatch bp: 12, indel count: 1, total indel length: 1. Stable id: NM_001304561.1, RefSeq accession: NM_001304561.1 CIGAR: 1448M1I1M, MD: MD:Z:938G138G57T3A37A0G32C29T143G46T9A2G3
Imperfect match for CDS. Length: 1479, match bp: 1479, mismatch bp: 0, indel count: 1, total indel length: 201. Stable id: NM_001291281.1, RefSeq accession: NM_001291281.2 CIGAR: 1000M201I479M, MD: MD:Z:1479
Imperfect match for CDS. Length: 1480, match bp: 1478, mismatch bp: 2, indel count: 1, total indel length: 200. Stable id: NM_001291281.1, RefSeq accession: NM_001291281.2 CIGAR: 999M200I481M, MD: MD:Z:1186C235G57
Imperfect match for CDS. Length: 1485, match bp: 1480, mismatch bp: 5, indel count: 1, total indel length: 3. Stable id: NM_000500.7, RefSeq accession: NM_000500.7 CIGAR: 15M3I1470M, MD: MD:Z:114T19A169A1164A7A7
Imperfect match for CDS. Length: 1485, match bp: 1480, mismatch bp: 5, indel count: 1, total indel length: 3. Stable id: NM_000500.7, RefSeq accession: NM_000500.7 CIGAR: 15M3I1470M, MD: MD:Z:114T19A169A1164A7A7
Imperfect match for CDS. Length: 1494, match bp: 1493, mismatch bp: 1, indel count: 2, total indel length: 2345. Stable id: NM_207414.2, RefSeq accession: NM_207414.2 CIGAR: 2M20I8M2325I1484M, MD: MD:Z:309T1184
Imperfect match for CDS. Length: 15463, match bp: 15444, mismatch bp: 0, indel count: 7, total indel length: 19. Stable id: NM_198455.2, RefSeq accession: NM_198455.2 CIGAR: 1115M3D1644M2D5985M4D460M2D2373M3D2390M4D31M1D1446M, MD: MD:Z:1115^CAG1644^GG5985^GATA460^TG2373^TAC2390^AGAC31^C1446
Imperfect match for CDS. Length: 1548, match bp: 1548, mismatch bp: 0, indel count: 2, total indel length: 144. Stable id: NM_032830.2, RefSeq accession: NM_032830.2 CIGAR: 4M45I5M99I1539M, MD: MD:Z:1548
Imperfect match for CDS. Length: 1549, match bp: 1549, mismatch bp: 0, indel count: 1, total indel length: 5. Stable id: NM_001178063.2, RefSeq accession: NM_001178063.2 CIGAR: 4M5I1545M, MD: MD:Z:1549
Imperfect match for CDS. Length: 1549, match bp: 1548, mismatch bp: 1, indel count: 1, total indel length: 5. Stable id: NM_001178063.2, RefSeq accession: NM_001178063.2 CIGAR: 4M5I1545M, MD: MD:Z:312A1236
Imperfect match for CDS. Length: 15685, match bp: 14994, mismatch bp: 672, indel count: 15, total indel length: 592. Stable id: NM_018406.6, RefSeq accession: NM_018406.6 CIGAR: 332M15D5716M48I62M48I766M48I1405M3D260M48I324M1D500M48I749M47I7M47I7M48I95M47I1470M48I38M48I264M48I3671M, MD: MD:Z:332^GGAGACTGTTACGCA565G231T62T379G247A1012G66G234C19G96C22C52G96C7C47T12C68C4T8T10G2A22T0G19T2G11G8T0A0G1C9C0A7G1G2A4G0C10C2T1G7T2T0T10G2G20A0G1C20G1C0A23G10G7A9C18C24C3C1T13G0A0T0G8T0T10G2A20G0A1A0C26C0C14C0G0A1G13T33A9C10G15C6C2C0A210G25G8T64T52T247A144T158T55T18A156C104C333T0C73C6A82G5T28G0T32A0T1C9C0A3T8A34A0C10C6T7T9G10G2C5T2C23C0G9T0G11T1C59C10A8G4T63C9T27T36G37C20C45A66A7A0G1C75C42C49G99C14C0G0A1A23A12C20T19T6T7G0A1G9T46T11C2G23C9T0G3A5G36T0G9C2G1T42G2A4G1C13A12T0A19C5T7G1T1C6A14G11G12C28G10A3T0A0G1C8T11G2G12C7A0G1C4C4C19T0C5T7G0A1G9T0G2C4A1G13T8T0A0G1C2T17C2G6T5A7G20G2G2A5C6C7G0A1A13T6G2A5C23T3T10G2A20G0A22C1G0G20A0G5C18C6T14G0A1A0C19C2G4C14C0G0A1A22T5C7C10A9T12C21G0A1A0C8C10C2G4C14C3A16A5C15C5A0G31C30C7C1G0G5C14A0G1G8G11C2G11A0C7A0G0C0C9C10C2G4T7T10G22G23T0G35A0C34G20A0G1C0T3C4^CAT0C0A5T3G2A4A0C1G14T0A9C0A1C9G1A4C15G2T8T4A5G7G14T0A0G1C9C0A12A5C6T21A11C6T6T21A14C3G6A9T0G8T0T10G1C0A24C8C81T43T37T0C12T19C13C26G0C7^G5T41A14T0G14G9T12T4C8C10A16A3G2A7T61A1A0C19C2G4C7A6C51G9T0G11C6T14G0A1G9T0G9C2G23G9T0G11C2T12C56A76C14C0G0A1A16A5C45C2G5C9A20C7C2G5C26G11C2G6T5C9C10C5T12C7C10A8A0T54C0A2C2G7G0C1T22C17A8A7A3C9A5C3C2G6C0G16C6A14C22G1C0T26C43A20G0A18A12G2C28C33A1A16A26T13C6A3G2A24A7A14T13A11C8C10C2G8G3C33T21A0G32C12C26C22A1A0C8C10C2G12C7A2C9C6C0A13G36C2G3A2C5A6C0A0G1C16C5C8G12G0A1A8G5A8G23C0T12C6G2A0C3G7C6T27A0C19G0A24G6G6C7A0G1A9C0A9G2A4C18A20C1G0G20A0G1C0T8T10G1C0A4G14T4C8C10C2G4T7T33G22G2T26C36C5T6T10C4A0G0A0C9A18T6T19T8G2G2A12T9G10T0A7G1C1T0G6C5A10A0C6A11T0G1C0A12A10C32G1G42C14G3T9T9G2A6G0T16T6G1C12G22A15C6G2A3T0G14T36C31C15G3C27A21G9C8C3T6C2G4C15A0G9A14C0A24C8C3T6C7C16G1A14A8G5C46G39G2A46G48A74T183A339C30A21G2875
Imperfect match for CDS. Length: 1587, match bp: 1584, mismatch bp: 3, indel count: 1, total indel length: 3. Stable id: NM_001264.4, RefSeq accession: NM_001264.4 CIGAR: 445M3I1142M, MD: MD:Z:51T1288C234G11
Imperfect match for CDS. Length: 1590, match bp: 1583, mismatch bp: 7, indel count: 1, total indel length: 3. Stable id: NM_001264.4, RefSeq accession: NM_001264.4 CIGAR: 1588M3I2M, MD: MD:Z:599A107T248T146G124C87G261G11
Imperfect match for CDS. Length: 1590, match bp: 1582, mismatch bp: 8, indel count: 1, total indel length: 3. Stable id: NM_001264.4, RefSeq accession: NM_001264.4 CIGAR: 1588M3I2M, MD: MD:Z:599A4C102T248T146G124C87G261G11
Imperfect match for CDS. Length: 1590, match bp: 1582, mismatch bp: 8, indel count: 1, total indel length: 3. Stable id: NM_001264.4, RefSeq accession: NM_001264.4 CIGAR: 1588M3I2M, MD: MD:Z:599A107T44A350G117G6C87G261G11
Imperfect match for CDS. Length: 1590, match bp: 1582, mismatch bp: 8, indel count: 1, total indel length: 3. Stable id: NM_001264.4, RefSeq accession: NM_001264.4 CIGAR: 1588M3I2M, MD: MD:Z:599A4C102T248T146G124C87G261G11
Imperfect match for CDS. Length: 1595, match bp: 1593, mismatch bp: 0, indel count: 1, total indel length: 2. Stable id: NM_001287349.1, RefSeq accession: NM_001287349.1 CIGAR: 1471M2D122M, MD: MD:Z:1471^GA122
Imperfect match for CDS. Length: 1595, match bp: 1593, mismatch bp: 0, indel count: 1, total indel length: 2. Stable id: NM_001287349.1, RefSeq accession: NM_001287349.1 CIGAR: 1471M2D122M, MD: MD:Z:1471^GA122
Imperfect match for CDS. Length: 15996, match bp: 15297, mismatch bp: 699, indel count: 9, total indel length: 399. Stable id: NM_018406.6, RefSeq accession: NM_018406.6 CIGAR: 6M113I9M15I4M32I8M47I6585M48I4163M48I610M24I4M24I270M48I4337M, MD: MD:Z:4C5G2T8T1A6004A11C2T14C23C1C1C3A13G12C0T17C1G12C3G0T6G14T13C7A0G1A8G0C10G2A5C6C2G7A23A5C6T2T6C5G3G10T10G25G4T6C15A9T0G23A5C40G13T20T10G2A4G14T0A0G24C1T3T7A106A10A12A5C18C8C3T6C7C14C0G0A1A15A4G2A12C7A0G1C13T9A20G0A1A0C27C14C1A0T0G8T0T34A0G1C9C10C2G23A14A1C6G20A0G1A16C3C2G24A8T12T7C28A6A25G4G20G24C0T8T18G10T3T0A0G1C9C13G3G15T8C4C10C1G0G6C13G0A1A9T3C4C4G7A2T10G1C0T1T7T7A11G13G1C1T6G0G0C7G4G4T1C6C31G2A5C17G5T14G2A5T15T1C13T0T5C8T17G3C5T0G11C6T6T7G0A1G0C27C14C0G0A1A2A0A16G2A4C7A20T12C6T27C52T1A5C0A23G9T0G9C2G20A0T1C12C1T5C8C17G8G0T1C8C2G5T6C9C0G10G9C2G23G9T0G11T14G6G16T5A2G13C34G6A5T15C5A25T21A1C9C6C15G16A5G26A10A32T3A9C0A11C6T17A9C0A11G2C12G9C8C10C2G3T0C7T30A37C36T0G9T0G33A0G1C0T8T10G2A15T3T0A0G1C30C5A7A0G1C15C13C14A0G1C0T7G0C10G2A4G7C6T20A14T4A10G9T10G2A3C8C25T1A6A7T15G20G2A20G0A1A0C8C10C2G4C1A12C0G3T9T9G9G16G0T6G14T6C57G17T12C0A12T7G0A1G0C3G23C1G12C17T9A4C5A1C10A2C17G1C0A21A0T0G0C7T8C2C2G4C0T6A6C26C6C10T12G14C2G5C14A0G14C16C26G11C1T0G12C7A1C29C7A7A0G1C23A12C7G0A1G4G4T0G9C2G5T2C1T12G10G34A1G0C8T0G9C2G1T4C7C5A0G1C7A1T10G1C0A4G15G12C10C1G0G3C0C14C4T8T10G2A20G0A18A12T2C11G0A15C9G12A7A0G1C16C3C2G7G12G0A1A13C9G12C8G2T8T17C0G0C13T0A2C16A11T7T10G9C6A5G5C47G14T0A0G1C7A8C5T6T14G0A1A0C8C19T6C10A9C2A7G2A5T26T21C5T6C2G33G1G1C10A45G1C0T9T32C4T6G37A1A8G0T4A5G6T0G14T3C9C3C10C11C10A16C7C7G38A12C7A0G1C9C0A2T9A4C18A44A1T0G8T0T9A2C0A12A8T2C8C17G1A15G18C40T30C3A2T9T0A36G7G8C0G40A7G11C17C18T2G24C0T8T3A14G16T2C13T8A5T1T10G14C12G24C0T12C6G2A12T7G0A1G9T22C11G0A32G12G0G1C0A8G0C12G13C11T8T5C11C1C6T7A1C0A9T6A12T8G6T2C7T0C4T5C7C15A0G9A1T3T8C1T11A11C7T0C10C1G0G4C16G1A8T5A7G0G5C14A0G1A9C0A13C19G0A1G9T0G9C2G4G39G2A46G123T183A339C194G896C57T1108G669
Imperfect match for CDS. Length: 16188, match bp: 16183, mismatch bp: 5, indel count: 4, total indel length: 207. Stable id: NM_018406.6, RefSeq accession: NM_018406.6 CIGAR: 6M113I9M15I4M32I8M47I16161M, MD: MD:Z:4C5G2T8T1A16163
Imperfect match for CDS. Length: 16188, match bp: 16183, mismatch bp: 5, indel count: 4, total indel length: 207. Stable id: NM_018406.6, RefSeq accession: NM_018406.6 CIGAR: 6M113I9M15I4M32I8M47I16161M, MD: MD:Z:4C5G2T8T1A16163
Imperfect match for CDS. Length: 16188, match bp: 16183, mismatch bp: 5, indel count: 4, total indel length: 207. Stable id: NM_018406.6, RefSeq accession: NM_018406.6 CIGAR: 6M113I9M15I4M32I8M47I16161M, MD: MD:Z:4C5G2T8T1A16163
Imperfect match for CDS. Length: 16188, match bp: 16182, mismatch bp: 6, indel count: 4, total indel length: 207. Stable id: NM_018406.6, RefSeq accession: NM_018406.6 CIGAR: 6M113I9M15I4M32I8M47I16161M, MD: MD:Z:4C5G2T8T1A15931A231
Imperfect match for CDS. Length: 16254, match bp: 15537, mismatch bp: 702, indel count: 1, total indel length: 15. Stable id: NM_018406.6, RefSeq accession: NM_018406.6 CIGAR: 332M15D15907M, MD: MD:Z:120C211^GGAGACTGTTACGCA565G24T206T62T379G247A1012G22C253T24C308G7G2G4C6C3A24A118G9T9T9T6T21A7G10C10C4G7T14G49C13C20C10C2G4C14C0G0A24G1C3C7C7G32T27T17C0C14C18T5C63C6C2C23T24A0C8C18C1G12C17T9A10A1C13C16T9T17A10A7G3T6C6A3C4G7T14G30A25C6C20C18C14C0G0A26C3C57C18T17C15C0G0A1A47A9C13G5T14G0A1A13C9G15A23C4C2G20G0A1A13C9G6T32T4C2G20G1C0A8A55C14G12G0A18A27A12T0A0T6G11C9T6A0C6A115C0T14C70G12T20C13G28A27C17A1A20C26A29C15G16A14A15G11C0A5C12C6C10A20C2G20A0G1T0T1T0C5T18G7C10A29C17T9T18C14C0G0A1G7G6A1C6G23A11T17C14A0G1T0T9A9G2A31G1C0A5C5C14T23C2C2T2C5G28T6A11C2T14C0G7G16C36A29C1T16T8A5T6C10A8G0C10G2A5C47C6C2T6C0A8G0C9T28T7G0T26T7A1C16G41T47T86T8T10G2A3C8C6T23T2C1T47G18T3A9C0A13T4C27C18C15G0A1A43T2T23G7T26T74T10A9C10C23G0A1A14A7G0G5T6T10A9T18G14T0A0G26T3T1C5A7A3C9A9C2G6C14G1C7A12G1C0A3T0G14T3C39T7G36C10A2A1C4C5A14C51T15T62G11C47C14A0G7T10C12T34C3C2G24A2C5T113G0C14T31T20C8C18C14C0G0A1G16A5C0A23G9T0G9C2G12T10G9T2C16C20A0A4G27A9C0G78G16G0T6G1C12T13C10A20G18G7A4C5A12A5C6T15G5A1C7G1C0A5C0G14G15T0A21A9T11A12A5C17A9C0A11G6T6T10A10A9G2A1C2G9G4T3A0C8C10C2G0T3T7A7A0G1C22C34C47T13A5C14A0G1C13T9A15T23A7A6C32C4G2A5C14A1T0G8T55A14T12A0G18C10C8C10A31T16A8T12G96G3G8T6T3G27T1C17C47G22C6T27C52T8A4C0T6C35A26T60A5C6C0A5T10G9T9G9C14A0G1C12C16C26G0T10C2G5T6C6T2C10C18C0T6C10A22G13C31C2G3T4C1T1T20C9A2G21A13A19C15T0G0C6A1T0G11C6T15G1C0T26C0C55A10C16A15C14C0T12C6G7G14T0A0G1C20C2G12A7G0A1G9T3C6G15C8G16T5C6C1C15A18A3G2A33C6A11C1A13G12C0T19G17T21T24A0C8C26C2G7A23A12T10G4G4T33C0A0G1C13T8C0A10A9G0A1A0C1C6C26C7A1T9T31T12G14C2G6C12C0A0G22G1C0A20G0A1A8G5A8G21A15C10C46A0C19G0A1G4G4T0G18T6C39C28T0G17G114A45G2T26C60C3A12T0A18T35G2G2A5T28A1A5G10T0C16A0C6A0T10T0G1C0A12T7G0A0G33G1G42C18C30T12A0G11C6C15G21T2C3C9A37T9A8C11G0A69A3A21T17C29G0C39G8T28C18G7G53A92A13C19G0A70G2A46G123T183A3268
Imperfect match for CDS. Length: 1649, match bp: 1649, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_153267.4, RefSeq accession: NM_153267.4 CIGAR: 1062M3I587M, MD: MD:Z:1649
Imperfect match for CDS. Length: 1651, match bp: 1650, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_032258.4, RefSeq accession: NM_032258.4 CIGAR: 1483M1D167M, MD: MD:Z:1483^C167
Imperfect match for CDS. Length: 1651, match bp: 1650, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_032258.4, RefSeq accession: NM_032258.4 CIGAR: 1483M1D167M, MD: MD:Z:1483^C167
Imperfect match for CDS. Length: 1662, match bp: 1649, mismatch bp: 13, indel count: 9, total indel length: 1479. Stable id: NM_015117.2, RefSeq accession: NM_015117.2 CIGAR: 1564M42I10M12I10M48I7M18I14M163I7M96I13M541I10M193I14M366I13M, MD: MD:Z:1561A10A5G9C14G9T1T16A2C6T1C7G8C
Imperfect match for CDS. Length: 1666, match bp: 1665, mismatch bp: 1, indel count: 3, total indel length: 288. Stable id: NM_001145437.1, RefSeq accession: NM_001145437.1 CIGAR: 5M155I5M53I5M80I1651M, MD: MD:Z:3C1662
Imperfect match for CDS. Length: 1693, match bp: 1692, mismatch bp: 1, indel count: 1, total indel length: 29. Stable id: NM_213632.2, RefSeq accession: NM_213632.2 CIGAR: 90M29I1603M, MD: MD:Z:1356A336
Imperfect match for CDS. Length: 170, match bp: 165, mismatch bp: 5, indel count: 2, total indel length: 237. Stable id: NM_001170820.3, RefSeq accession: NM_001170820.3 CIGAR: 12M215I6M22I152M, MD: MD:Z:0T1T4C0T10G150
Imperfect match for CDS. Length: 1713, match bp: 1706, mismatch bp: 7, indel count: 4, total indel length: 756. Stable id: NM_025259.5, RefSeq accession: NM_025259.5 CIGAR: 286M97I4M111I11M250I6M298I1406M, MD: MD:Z:271G1G0G5G0A1C13T1415
Imperfect match for CDS. Length: 1798, match bp: 1797, mismatch bp: 1, indel count: 1, total indel length: 29. Stable id: NM_213631.2, RefSeq accession: NM_213631.2 CIGAR: 90M29I1708M, MD: MD:Z:1461A336
Imperfect match for CDS. Length: 1812, match bp: 1798, mismatch bp: 14, indel count: 3, total indel length: 693. Stable id: NM_172166.3, RefSeq accession: NM_172166.3 CIGAR: 283M225I19M228I8M240I1502M, MD: MD:Z:271G1G0G5G0A5G1A1T3C1C6A11C0A0C1493
Imperfect match for CDS. Length: 1812, match bp: 1798, mismatch bp: 14, indel count: 3, total indel length: 693. Stable id: NM_002441.4, RefSeq accession: NM_002441.4 CIGAR: 283M225I19M228I8M240I1502M, MD: MD:Z:271G1G0G5G0A5G1A1T3C1C6A11C0A0C1493
Imperfect match for CDS. Length: 1815, match bp: 1801, mismatch bp: 14, indel count: 3, total indel length: 693. Stable id: NM_172165.3, RefSeq accession: NM_172165.3 CIGAR: 283M225I19M228I8M240I1505M, MD: MD:Z:271G1G0G5G0A5G1A1T3C1C6A11C0A0C1496
Imperfect match for CDS. Length: 1851, match bp: 1846, mismatch bp: 5, indel count: 2, total indel length: 925. Stable id: NM_001164239.1, RefSeq accession: NM_001164239.1 CIGAR: 1829M226I18M699I4M, MD: MD:Z:1829C2T1G3A2C9
Imperfect match for CDS. Length: 1881, match bp: 1878, mismatch bp: 0, indel count: 2, total indel length: 3. Stable id: XM_011514191.1, RefSeq accession: XM_011514191.1 CIGAR: 1056M1D73M2D749M, MD: MD:Z:1056^G73^AT749
Imperfect match for CDS. Length: 1896, match bp: 1885, mismatch bp: 8, indel count: 1, total indel length: 3. Stable id: NM_001282493.1, RefSeq accession: NM_001282493.1 CIGAR: 1281M3D612M, MD: MD:Z:651A37A144G379T66^GGA534C40C2G2C30
Imperfect match for CDS. Length: 1897, match bp: 1882, mismatch bp: 15, indel count: 1, total indel length: 2. Stable id: NM_001282472.1, RefSeq accession: NM_001282472.1 CIGAR: 1420M2I477M, MD: MD:Z:680G153G148G46A91G198A26T40A65C3C41T152C31T33G5C170
Imperfect match for CDS. Length: 1911, match bp: 1910, mismatch bp: 1, indel count: 1, total indel length: 284. Stable id: NM_019105.6, RefSeq accession: NM_019105.6 CIGAR: 6M284I1905M, MD: MD:Z:711G1199
Imperfect match for CDS. Length: 1985, match bp: 1980, mismatch bp: 5, indel count: 1, total indel length: 1. Stable id: NM_001304457.1, RefSeq accession: NM_001304457.1 CIGAR: 1792M1I193M, MD: MD:Z:1644G0A42C125A67A102
Imperfect match for CDS. Length: 1985, match bp: 1980, mismatch bp: 5, indel count: 1, total indel length: 1. Stable id: NM_001304457.1, RefSeq accession: NM_001304457.1 CIGAR: 1792M1I193M, MD: MD:Z:1644G0A42C125A67A102
Imperfect match for CDS. Length: 2031, match bp: 2026, mismatch bp: 5, indel count: 2, total indel length: 925. Stable id: NM_003587.4, RefSeq accession: NM_003587.4 CIGAR: 2009M226I18M699I4M, MD: MD:Z:2009C2T1G3A2C9
Imperfect match for CDS. Length: 2048, match bp: 2048, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: XM_011547132.1, RefSeq accession: XM_011547132.1 CIGAR: 255M1I1793M, MD: MD:Z:2048
Imperfect match for CDS. Length: 2090, match bp: 2087, mismatch bp: 3, indel count: 4, total indel length: 859. Stable id: NM_001202504.1, RefSeq accession: NM_001202504.1 CIGAR: 2060M666I7M53I9M10I8M130I6M, MD: MD:Z:2063C4C9A11
Imperfect match for CDS. Length: 2192, match bp: 2189, mismatch bp: 3, indel count: 1, total indel length: 1. Stable id: NM_172166.3, RefSeq accession: NM_172166.3 CIGAR: 2185M1I7M, MD: MD:Z:2181G0T0G8
Imperfect match for CDS. Length: 2192, match bp: 2189, mismatch bp: 3, indel count: 1, total indel length: 1. Stable id: NM_002441.4, RefSeq accession: NM_002441.4 CIGAR: 2185M1I7M, MD: MD:Z:2181G0T0G8
Imperfect match for CDS. Length: 2195, match bp: 2192, mismatch bp: 3, indel count: 1, total indel length: 1. Stable id: NM_172165.3, RefSeq accession: NM_172165.3 CIGAR: 2188M1I7M, MD: MD:Z:2184G0T0G8
Imperfect match for CDS. Length: 228, match bp: 226, mismatch bp: 2, indel count: 2, total indel length: 1254. Stable id: NM_006669.6, RefSeq accession: NM_006669.6 CIGAR: 14M822I10M432I204M, MD: MD:Z:18T2T206
Imperfect match for CDS. Length: 2343, match bp: 2339, mismatch bp: 4, indel count: 1, total indel length: 145. Stable id: NM_001159746.2, RefSeq accession: NM_001159746.2 CIGAR: 5M145I2338M, MD: MD:Z:0C0A3C842A1494
Imperfect match for CDS. Length: 236, match bp: 235, mismatch bp: 1, indel count: 3, total indel length: 5914. Stable id: NM_003648.2, RefSeq accession: NM_003648.2 CIGAR: 218M3886I10M635I7M1393I1M, MD: MD:Z:220G15
Imperfect match for CDS. Length: 2424, match bp: 2423, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001090.2, RefSeq accession: NM_001090.2 CIGAR: 2423M1D, MD: MD:Z:2423^A
Imperfect match for CDS. Length: 2424, match bp: 2423, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001090.2, RefSeq accession: NM_001090.2 CIGAR: 2423M1D, MD: MD:Z:2423^A
Imperfect match for CDS. Length: 2424, match bp: 2423, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001090.2, RefSeq accession: NM_001090.2 CIGAR: 2423M1D, MD: MD:Z:2423^A
Imperfect match for CDS. Length: 2424, match bp: 2423, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001090.2, RefSeq accession: NM_001090.2 CIGAR: 2423M1D, MD: MD:Z:2423^A
Imperfect match for CDS. Length: 2447, match bp: 2444, mismatch bp: 3, indel count: 4, total indel length: 859. Stable id: NM_004715.4, RefSeq accession: NM_004715.4 CIGAR: 2417M666I7M53I9M10I8M130I6M, MD: MD:Z:2420C4C9A11
Imperfect match for CDS. Length: 24562, match bp: 24551, mismatch bp: 11, indel count: 2, total indel length: 593. Stable id: NM_173600.2, RefSeq accession: NM_173600.2 CIGAR: 12452M2I6603M591I5507M, MD: MD:Z:4477T14580T77A46A69T1699T258A19C40T137T323A2826
Imperfect match for CDS. Length: 246, match bp: 242, mismatch bp: 4, indel count: 4, total indel length: 1188. Stable id: NM_001278398.2, RefSeq accession: NM_001278398.2 CIGAR: 14M55I5M659I11M323I11M151I205M, MD: MD:Z:23T0G8C4C207
Imperfect match for CDS. Length: 246, match bp: 242, mismatch bp: 4, indel count: 4, total indel length: 1239. Stable id: NM_001081638.3, RefSeq accession: NM_001081638.3 CIGAR: 14M55I5M282I5M494I18M408I204M, MD: MD:Z:27A8A0T0T207
Imperfect match for CDS. Length: 246, match bp: 242, mismatch bp: 4, indel count: 4, total indel length: 1242. Stable id: NM_001081637.2, RefSeq accession: NM_001081637.2 CIGAR: 14M55I5M282I5M494I18M411I204M, MD: MD:Z:27A8A0T0T207
Imperfect match for CDS. Length: 2538, match bp: 2537, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001025091.1, RefSeq accession: NM_001025091.1 CIGAR: 2537M1D, MD: MD:Z:2537^A
Imperfect match for CDS. Length: 2538, match bp: 2537, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001025091.1, RefSeq accession: NM_001025091.1 CIGAR: 2537M1D, MD: MD:Z:2537^A
Imperfect match for CDS. Length: 2538, match bp: 2537, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001025091.1, RefSeq accession: NM_001025091.1 CIGAR: 2537M1D, MD: MD:Z:2537^A
Imperfect match for CDS. Length: 2538, match bp: 2537, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001025091.1, RefSeq accession: NM_001025091.1 CIGAR: 2537M1D, MD: MD:Z:2537^A
Imperfect match for CDS. Length: 2717, match bp: 2712, mismatch bp: 3, indel count: 2, total indel length: 2. Stable id: NM_178167.3, RefSeq accession: NM_178167.3 CIGAR: 10M1D112M1D2593M, MD: MD:Z:10^C27A1A9A72^G2593
Imperfect match for CDS. Length: 2778, match bp: 2772, mismatch bp: 5, indel count: 3, total indel length: 5. Stable id: NM_130901.1, RefSeq accession: NM_130901.1 CIGAR: 2046M3I144M1I47M1D540M, MD: MD:Z:1112C1104A19^G15G16C5A501
Imperfect match for CDS. Length: 297, match bp: 282, mismatch bp: 15, indel count: 7, total indel length: 1188. Stable id: NM_001081639.3, RefSeq accession: NM_001081639.3 CIGAR: 13M483I17M196I10M106I20M64I4M53I20M281I9M5I204M, MD: MD:Z:14A10T0G3A7C4G2A4G0C1C9C3A10G5G6C204
Imperfect match for CDS. Length: 3087, match bp: 3087, mismatch bp: 0, indel count: 3, total indel length: 3. Stable id: XM_001717074.7, RefSeq accession: XM_001717074.7 CIGAR: 381M1I1397M1I1253M1I56M, MD: MD:Z:3087
Imperfect match for CDS. Length: 3130, match bp: 3129, mismatch bp: 1, indel count: 1, total indel length: 29. Stable id: NM_152503.5, RefSeq accession: NM_152503.5 CIGAR: 90M29I3040M, MD: MD:Z:1461A1668
Imperfect match for CDS. Length: 3156, match bp: 3155, mismatch bp: 1, indel count: 1, total indel length: 542. Stable id: NM_004557.3, RefSeq accession: NM_004557.3 CIGAR: 6M542I3150M, MD: MD:Z:110C3045
Imperfect match for CDS. Length: 322, match bp: 321, mismatch bp: 1, indel count: 1, total indel length: 3657. Stable id: NM_015520.1, RefSeq accession: NM_015520.1 CIGAR: 313M3657I9M, MD: MD:Z:314T7
Imperfect match for CDS. Length: 322, match bp: 320, mismatch bp: 2, indel count: 1, total indel length: 2563. Stable id: NM_004742.2, RefSeq accession: NM_004742.2 CIGAR: 313M2563I9M, MD: MD:Z:314T1A5
Imperfect match for CDS. Length: 322, match bp: 321, mismatch bp: 1, indel count: 1, total indel length: 3484. Stable id: NM_001033057.1, RefSeq accession: NM_001033057.1 CIGAR: 313M3484I9M, MD: MD:Z:314T7
Imperfect match for CDS. Length: 3321, match bp: 3316, mismatch bp: 5, indel count: 4, total indel length: 11655. Stable id: NM_001008781.2, RefSeq accession: NM_001008781.2 CIGAR: 3291M5476I12M1579I10M2873I7M1727I1M, MD: MD:Z:3296C2T1A2A8A7
Imperfect match for CDS. Length: 3369, match bp: 3334, mismatch bp: 35, indel count: 1, total indel length: 276. Stable id: NM_017940.4, RefSeq accession: NM_017940.4 CIGAR: 2838M276I531M, MD: MD:Z:14T296A86G3A67A3T4G165A43C182C2C10A0T69T44A212A67A3T4G209C182C2C10A0T102A29A103A48T109C3G28C3G66C346A214T606
Imperfect match for CDS. Length: 3400, match bp: 3394, mismatch bp: 5, indel count: 3, total indel length: 4. Stable id: NM_130464.2, RefSeq accession: NM_130464.2 CIGAR: 1426M2I130M1I142M1D1701M, MD: MD:Z:1427G0T122T0A145^G382T1318
Imperfect match for CDS. Length: 3417, match bp: 3402, mismatch bp: 0, indel count: 2, total indel length: 15. Stable id: NM_018717.4, RefSeq accession: NM_018717.4 CIGAR: 1467M12D809M3D1126M, MD: MD:Z:1467^CAGCAGCAGCAG809^GCA1126
Imperfect match for CDS. Length: 3418, match bp: 3417, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: XM_011546003.1, RefSeq accession: XM_011546003.1 CIGAR: 2349M1D1068M, MD: MD:Z:2349^G1068
Imperfect match for CDS. Length: 354, match bp: 346, mismatch bp: 5, indel count: 1, total indel length: 3. Stable id: NM_001098407.1, RefSeq accession: NM_001098407.1 CIGAR: 24M3D327M, MD: MD:Z:24^TAT3T13G5T3C167C131
Imperfect match for CDS. Length: 354, match bp: 349, mismatch bp: 2, indel count: 1, total indel length: 3. Stable id: NM_001098411.3, RefSeq accession: NM_001098411.3 CIGAR: 24M3D327M, MD: MD:Z:24^TAT3T191G131
Imperfect match for CDS. Length: 358, match bp: 352, mismatch bp: 6, indel count: 7, total indel length: 4768. Stable id: NM_015011.1, RefSeq accession: NM_015011.1 CIGAR: 299M43I4M139I6M108I6M24I12M260I7M268I18M3926I6M, MD: MD:Z:297A22A16A4T2A2G9
Imperfect match for CDS. Length: 363, match bp: 363, mismatch bp: 0, indel count: 1, total indel length: 343. Stable id: NM_022463.4, RefSeq accession: NM_022463.4 CIGAR: 360M343I3M, MD: MD:Z:363
Imperfect match for CDS. Length: 363, match bp: 363, mismatch bp: 0, indel count: 1, total indel length: 343. Stable id: NM_022463.4, RefSeq accession: NM_022463.4 CIGAR: 360M343I3M, MD: MD:Z:363
Imperfect match for CDS. Length: 367, match bp: 355, mismatch bp: 12, indel count: 6, total indel length: 1944. Stable id: NM_052903.4, RefSeq accession: NM_052903.4 CIGAR: 312M46I9M7I5M202I5M175I16M146I14M1368I6M, MD: MD:Z:309G0T1T0G21C3G1A2T0T7C1T5A5
Imperfect match for CDS. Length: 367, match bp: 356, mismatch bp: 11, indel count: 6, total indel length: 2945. Stable id: NM_001102610.1, RefSeq accession: NM_001102610.1 CIGAR: 312M715I5M127I13M659I6M424I10M197I19M823I2M, MD: MD:Z:309G0T11T4G1T11A5C6C1A3G3A2
Imperfect match for CDS. Length: 368, match bp: 367, mismatch bp: 1, indel count: 3, total indel length: 5914. Stable id: NM_152879.2, RefSeq accession: NM_152879.2 CIGAR: 350M3886I10M635I7M1393I1M, MD: MD:Z:352G15
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288957.1, RefSeq accession: NM_001288957.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288957.1, RefSeq accession: NM_001288957.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288954.1, RefSeq accession: NM_001288954.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288954.1, RefSeq accession: NM_001288954.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288995.1, RefSeq accession: NM_001288995.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288995.1, RefSeq accession: NM_001288995.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_005532.4, RefSeq accession: NM_005532.4 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_005532.4, RefSeq accession: NM_005532.4 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288958.1, RefSeq accession: NM_001288958.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 369, match bp: 360, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_001288958.1, RefSeq accession: NM_001288958.1 CIGAR: 125M9D235M, MD: MD:Z:125^GGCCATGGC235
Imperfect match for CDS. Length: 380, match bp: 377, mismatch bp: 3, indel count: 5, total indel length: 2702. Stable id: NM_001103184.3, RefSeq accession: NM_001103184.3 CIGAR: 12M306I6M699I10M108I12M652I10M937I330M, MD: MD:Z:1T30T11A335
Imperfect match for CDS. Length: 388, match bp: 381, mismatch bp: 6, indel count: 2, total indel length: 250. Stable id: NM_001190413.1, RefSeq accession: NM_001190413.1 CIGAR: 362M1D13M249I12M, MD: MD:Z:358G1G1^A1A0T16G3T1
Imperfect match for CDS. Length: 388, match bp: 381, mismatch bp: 6, indel count: 2, total indel length: 250. Stable id: NM_001190412.1, RefSeq accession: NM_001190412.1 CIGAR: 362M1D13M249I12M, MD: MD:Z:358G1G1^A1A0T16G3T1
Imperfect match for CDS. Length: 3921, match bp: 3918, mismatch bp: 0, indel count: 2, total indel length: 3. Stable id: XM_011543784.1, RefSeq accession: XM_011543784.1 CIGAR: 3015M1D69M2D834M, MD: MD:Z:3015^A69^AA834
Imperfect match for CDS. Length: 3975, match bp: 3969, mismatch bp: 0, indel count: 4, total indel length: 6. Stable id: XM_011543788.1, RefSeq accession: XM_011543788.1 CIGAR: 1521M1D73M2D1553M1D73M2D749M, MD: MD:Z:1521^G73^AT1553^G73^AT749
Imperfect match for CDS. Length: 4020, match bp: 4011, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_130445.3, RefSeq accession: NM_130445.3 CIGAR: 2823M9D1188M, MD: MD:Z:2823^GGCCCCCCA1188
Imperfect match for CDS. Length: 403, match bp: 403, mismatch bp: 0, indel count: 1, total indel length: 2. Stable id: NM_001243538.1, RefSeq accession: NM_001243538.1 CIGAR: 66M2I337M, MD: MD:Z:403
Imperfect match for CDS. Length: 424, match bp: 418, mismatch bp: 6, indel count: 7, total indel length: 4768. Stable id: NM_001198950.1, RefSeq accession: NM_001198950.1 CIGAR: 365M43I4M139I6M108I6M24I12M260I7M268I18M3926I6M, MD: MD:Z:363A22A16A4T2A2G9
Imperfect match for CDS. Length: 425, match bp: 423, mismatch bp: 2, indel count: 2, total indel length: 1072. Stable id: NM_001278405.2, RefSeq accession: NM_001278405.2 CIGAR: 19M880I8M192I398M, MD: MD:Z:13A14A396
Imperfect match for CDS. Length: 429, match bp: 420, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_001242356.2, RefSeq accession: NM_001242356.2 CIGAR: 401M90I16M37I7M18I5M, MD: MD:Z:397G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 429, match bp: 420, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_001242356.2, RefSeq accession: NM_001242356.2 CIGAR: 401M90I16M37I7M18I5M, MD: MD:Z:397G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 429, match bp: 420, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_001242356.2, RefSeq accession: NM_001242356.2 CIGAR: 401M90I16M37I7M18I5M, MD: MD:Z:397G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 429, match bp: 420, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_001242356.2, RefSeq accession: NM_001242356.2 CIGAR: 401M90I16M37I7M18I5M, MD: MD:Z:397G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 429, match bp: 420, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_001242356.2, RefSeq accession: NM_001242356.2 CIGAR: 401M90I16M37I7M18I5M, MD: MD:Z:397G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 429, match bp: 420, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_001242356.2, RefSeq accession: NM_001242356.2 CIGAR: 401M90I16M37I7M18I5M, MD: MD:Z:397G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 432, match bp: 416, mismatch bp: 16, indel count: 8, total indel length: 537. Stable id: NM_014218.2, RefSeq accession: NM_014218.2 CIGAR: 31M1I6M2I7M270I9M24I12M216I15M2I11M5I8M17I333M, MD: MD:Z:9C9T1T5C10C10G7A2G2A9C2G1T2C4C0G4T339
Imperfect match for CDS. Length: 446, match bp: 443, mismatch bp: 3, indel count: 3, total indel length: 2344. Stable id: NM_001297653.1, RefSeq accession: NM_001297653.1 CIGAR: 421M63I6M1176I9M1105I10M, MD: MD:Z:281C161A1G
Imperfect match for CDS. Length: 446, match bp: 441, mismatch bp: 5, indel count: 2, total indel length: 765. Stable id: NM_001202522.1, RefSeq accession: NM_001202522.1 CIGAR: 421M512I16M253I9M, MD: MD:Z:281C140A4C5C3A8
Imperfect match for CDS. Length: 446, match bp: 443, mismatch bp: 3, indel count: 3, total indel length: 2344. Stable id: NM_001954.4, RefSeq accession: NM_001954.4 CIGAR: 421M63I6M1176I9M1105I10M, MD: MD:Z:281C161A1G
Imperfect match for CDS. Length: 446, match bp: 443, mismatch bp: 3, indel count: 3, total indel length: 2455. Stable id: NM_013993.2, RefSeq accession: NM_013993.2 CIGAR: 421M63I6M1287I9M1105I10M, MD: MD:Z:281C161A1G
Imperfect match for CDS. Length: 446, match bp: 441, mismatch bp: 5, indel count: 2, total indel length: 765. Stable id: NM_001202521.1, RefSeq accession: NM_001202521.1 CIGAR: 421M512I16M253I9M, MD: MD:Z:281C140A4C5C3A8
Imperfect match for CDS. Length: 446, match bp: 443, mismatch bp: 3, indel count: 3, total indel length: 2473. Stable id: NM_013994.2, RefSeq accession: NM_013994.2 CIGAR: 421M63I6M1287I9M1123I10M, MD: MD:Z:281C161A1G
Imperfect match for CDS. Length: 446, match bp: 443, mismatch bp: 3, indel count: 3, total indel length: 2344. Stable id: NM_001297652.1, RefSeq accession: NM_001297652.1 CIGAR: 421M63I6M1176I9M1105I10M, MD: MD:Z:281C161A1G
Imperfect match for CDS. Length: 446, match bp: 443, mismatch bp: 3, indel count: 3, total indel length: 2455. Stable id: NM_001297654.1, RefSeq accession: NM_001297654.1 CIGAR: 421M63I6M1287I9M1105I10M, MD: MD:Z:281C161A1G
Imperfect match for CDS. Length: 4560, match bp: 4551, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_030582.3, RefSeq accession: NM_030582.3 CIGAR: 3363M9D1188M, MD: MD:Z:3363^GGCCCCCCA1188
Imperfect match for CDS. Length: 458, match bp: 456, mismatch bp: 2, indel count: 1, total indel length: 1. Stable id: NM_014068.2, RefSeq accession: NM_014068.2 CIGAR: 111M1I347M, MD: MD:Z:109A286T61
Imperfect match for CDS. Length: 478, match bp: 478, mismatch bp: 0, indel count: 1, total indel length: 2. Stable id: XM_011546968.1, RefSeq accession: XM_011546968.1 CIGAR: 198M2I280M, MD: MD:Z:478
Imperfect match for CDS. Length: 500, match bp: 497, mismatch bp: 3, indel count: 3, total indel length: 2344. Stable id: NM_001202523.1, RefSeq accession: NM_001202523.1 CIGAR: 475M63I6M1176I9M1105I10M, MD: MD:Z:335C161A1G
Imperfect match for CDS. Length: 503, match bp: 501, mismatch bp: 0, indel count: 1, total indel length: 2. Stable id: XM_011528474.1, RefSeq accession: XM_011528474.1 CIGAR: 414M2D87M, MD: MD:Z:414^AA87
Imperfect match for CDS. Length: 5159, match bp: 5156, mismatch bp: 3, indel count: 2, total indel length: 37. Stable id: NM_033517.1, RefSeq accession: NM_033517.1 CIGAR: 1302M33I7M4I3850M, MD: MD:Z:1303T3T0T3850
Imperfect match for CDS. Length: 525, match bp: 510, mismatch bp: 0, indel count: 1, total indel length: 15. Stable id: NM_030975.2, RefSeq accession: NM_030975.2 CIGAR: 33M15D477M, MD: MD:Z:33^ACCTGCTGCAGGACC477
Imperfect match for CDS. Length: 5265, match bp: 5256, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_130444.2, RefSeq accession: NM_130444.2 CIGAR: 4068M9D1188M, MD: MD:Z:4068^GGCCCCCCA1188
Imperfect match for CDS. Length: 532, match bp: 523, mismatch bp: 8, indel count: 3, total indel length: 3189. Stable id: NM_030955.2, RefSeq accession: NM_030955.2 CIGAR: 489M864I8M1D28M2324I6M, MD: MD:Z:497^T0T6T0T2T1T2A0T13A2
Imperfect match for CDS. Length: 5324, match bp: 5324, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_001278425.1, RefSeq accession: NM_001278425.1 CIGAR: 4176M1I1148M, MD: MD:Z:5324
Imperfect match for CDS. Length: 549, match bp: 548, mismatch bp: 1, indel count: 1, total indel length: 146. Stable id: NM_016529.4, RefSeq accession: NM_016529.5 CIGAR: 6M146I543M, MD: MD:Z:2T546
Imperfect match for CDS. Length: 5823, match bp: 5818, mismatch bp: 5, indel count: 1, total indel length: 3. Stable id: NM_001163809.1, RefSeq accession: NM_001163809.1 CIGAR: 3087M3I2736M, MD: MD:Z:2738A2228G155A323G188T186
Imperfect match for CDS. Length: 587, match bp: 581, mismatch bp: 4, indel count: 1, total indel length: 2. Stable id: NM_001289154.1, RefSeq accession: NM_001289154.1 CIGAR: 538M2D47M, MD: MD:Z:177A18G95C113A131^CT47
Imperfect match for CDS. Length: 5883, match bp: 5879, mismatch bp: 4, indel count: 1, total indel length: 87. Stable id: NM_018012.3, RefSeq accession: NM_018012.3 CIGAR: 7M87I5876M, MD: MD:Z:6A4G2A4T5863
Imperfect match for CDS. Length: 5901, match bp: 5900, mismatch bp: 1, indel count: 1, total indel length: 48. Stable id: NM_012115.3, RefSeq accession: NM_012115.3 CIGAR: 5892M48I9M, MD: MD:Z:5893A7
Imperfect match for CDS. Length: 5901, match bp: 5900, mismatch bp: 1, indel count: 1, total indel length: 48. Stable id: NM_001137667.1, RefSeq accession: NM_001137667.1 CIGAR: 5892M48I9M, MD: MD:Z:5893A7
Imperfect match for CDS. Length: 5901, match bp: 5900, mismatch bp: 1, indel count: 1, total indel length: 48. Stable id: NM_001137668.1, RefSeq accession: NM_001137668.1 CIGAR: 5892M48I9M, MD: MD:Z:5893A7
Imperfect match for CDS. Length: 5915, match bp: 5912, mismatch bp: 1, indel count: 1, total indel length: 2. Stable id: NM_000937.4, RefSeq accession: NM_000937.4 CIGAR: 5510M2D403M, MD: MD:Z:2291T3218^CA403
Imperfect match for CDS. Length: 6009, match bp: 6005, mismatch bp: 4, indel count: 1, total indel length: 3. Stable id: NM_004557.3, RefSeq accession: NM_004557.3 CIGAR: 15M3I5994M, MD: MD:Z:329C15C2617C1133A1911
Imperfect match for CDS. Length: 6018, match bp: 6007, mismatch bp: 5, indel count: 1, total indel length: 6. Stable id: NM_004557.3, RefSeq accession: NM_004557.3 CIGAR: 15M6D5997M, MD: MD:Z:15^CTGCTG317C15C608G2008C1184A1860
Imperfect match for CDS. Length: 646, match bp: 646, mismatch bp: 0, indel count: 1, total indel length: 136. Stable id: NM_001102594.1, RefSeq accession: NM_001102594.1 CIGAR: 5M136I641M, MD: MD:Z:646
Imperfect match for CDS. Length: 646, match bp: 646, mismatch bp: 0, indel count: 1, total indel length: 136. Stable id: NM_020892.2, RefSeq accession: NM_020892.2 CIGAR: 5M136I641M, MD: MD:Z:646
Imperfect match for CDS. Length: 646, match bp: 646, mismatch bp: 0, indel count: 1, total indel length: 136. Stable id: NM_001102595.1, RefSeq accession: NM_001102595.1 CIGAR: 5M136I641M, MD: MD:Z:646
Imperfect match for CDS. Length: 698, match bp: 694, mismatch bp: 4, indel count: 1, total indel length: 295. Stable id: NM_018238.3, RefSeq accession: NM_018238.3 CIGAR: 12M295I686M, MD: MD:Z:3T2T1A5C683
Imperfect match for CDS. Length: 710, match bp: 703, mismatch bp: 5, indel count: 1, total indel length: 2. Stable id: NM_001289153.1, RefSeq accession: NM_001289153.1 CIGAR: 661M2D47M, MD: MD:Z:141G158A18G95C113A131^CT47
Imperfect match for CDS. Length: 710, match bp: 703, mismatch bp: 5, indel count: 1, total indel length: 2. Stable id: NM_001289152.1, RefSeq accession: NM_001289152.1 CIGAR: 661M2D47M, MD: MD:Z:141G158A18G95C113A131^CT47
Imperfect match for CDS. Length: 714, match bp: 705, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_004829.6, RefSeq accession: NM_004829.6 CIGAR: 686M90I16M37I7M18I5M, MD: MD:Z:682G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 714, match bp: 705, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_004829.6, RefSeq accession: NM_004829.6 CIGAR: 686M90I16M37I7M18I5M, MD: MD:Z:682G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 714, match bp: 705, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_004829.6, RefSeq accession: NM_004829.6 CIGAR: 686M90I16M37I7M18I5M, MD: MD:Z:682G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 714, match bp: 705, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_004829.6, RefSeq accession: NM_004829.6 CIGAR: 686M90I16M37I7M18I5M, MD: MD:Z:682G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 714, match bp: 705, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_004829.6, RefSeq accession: NM_004829.6 CIGAR: 686M90I16M37I7M18I5M, MD: MD:Z:682G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 714, match bp: 705, mismatch bp: 9, indel count: 3, total indel length: 145. Stable id: NM_004829.6, RefSeq accession: NM_004829.6 CIGAR: 686M90I16M37I7M18I5M, MD: MD:Z:682G0T3T0A0A4T1C5A6A4
Imperfect match for CDS. Length: 732, match bp: 729, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_001193335.1, RefSeq accession: NM_001193335.1 CIGAR: 111M3D618M, MD: MD:Z:111^GAT618
Imperfect match for CDS. Length: 7379, match bp: 7379, mismatch bp: 0, indel count: 1, total indel length: 1. Stable id: NM_052892.3, RefSeq accession: NM_052892.3 CIGAR: 6231M1I1148M, MD: MD:Z:7379
Imperfect match for CDS. Length: 765, match bp: 722, mismatch bp: 43, indel count: 1, total indel length: 3. Stable id: NM_002122.3, RefSeq accession: NM_002122.3 CIGAR: 234M3I531M, MD: MD:Z:21A16C20T40A0C19C20T21C3G7T25T4A0A2T4C0T4C0A2G1C2A13A0T0T8C6C6C0T6T12C12C87C41C17C134T0G37A57G16G2C5G7G39C6
Imperfect match for CDS. Length: 765, match bp: 723, mismatch bp: 42, indel count: 1, total indel length: 3. Stable id: NM_002122.3, RefSeq accession: NM_002122.3 CIGAR: 234M3I531M, MD: MD:Z:21A13T2C53C7A20C65G14T4T1T1T5T0T0C4A0C5A13A0T0T8C6C5C0C0T6T10G0T0C12C80T6C59C78C16G4G34A70C8A15G33G39C6
Imperfect match for CDS. Length: 765, match bp: 723, mismatch bp: 42, indel count: 1, total indel length: 3. Stable id: NM_002122.3, RefSeq accession: NM_002122.3 CIGAR: 234M3I531M, MD: MD:Z:21A13T2C53C7A20C65G14T4T1T1T5T0T0C4A0C5A13A0T0T8C6C5C0C0T6T10G0T0C12C80T6C59C78C16G4G34A70C8A15G33G39C6
Imperfect match for CDS. Length: 765, match bp: 722, mismatch bp: 43, indel count: 1, total indel length: 3. Stable id: NM_002122.3, RefSeq accession: NM_002122.3 CIGAR: 234M3I531M, MD: MD:Z:21A16C20T40A0C19C20T21C3G7T25T4A0A2T4C0T4C0A2G1C2A13A0T0T8C6C6C0T6T12C12C87C41C17C134T0G37A57G16G2C5G7G39C6
Imperfect match for CDS. Length: 787, match bp: 772, mismatch bp: 15, indel count: 4, total indel length: 432. Stable id: NM_198883.3, RefSeq accession: NM_198883.3 CIGAR: 10M3I5M67I14M317I14M45I744M, MD: MD:Z:1G1T1T9G5A3G4T7A1A40C12T21C6A25A42A594
Imperfect match for CDS. Length: 790, match bp: 782, mismatch bp: 8, indel count: 5, total indel length: 965. Stable id: NM_007028.3, RefSeq accession: NM_007028.3 CIGAR: 745M103I9M577I7M16I14M115I7M154I8M, MD: MD:Z:748G3C11A3C3G0A2T9T3
Imperfect match for CDS. Length: 834, match bp: 829, mismatch bp: 5, indel count: 2, total indel length: 4809. Stable id: NM_178039.3, RefSeq accession: NM_178039.3 CIGAR: 822M658I9M4151I3M, MD: MD:Z:1T822T2T3G1C
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1493. Stable id: NM_001297653.1, RefSeq accession: NM_001297653.1 CIGAR: 758M1D58M666I6M107I10M719I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T17T4C12
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1166. Stable id: NM_001202522.1, RefSeq accession: NM_001202522.1 CIGAR: 758M1D57M253I8M252I9M660I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T12C8C13
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1493. Stable id: NM_001954.4, RefSeq accession: NM_001954.4 CIGAR: 758M1D58M666I6M107I10M719I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T17T4C12
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1604. Stable id: NM_013993.2, RefSeq accession: NM_013993.2 CIGAR: 758M1D58M666I6M218I10M719I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T17T4C12
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1248. Stable id: NM_001202521.1, RefSeq accession: NM_001202521.1 CIGAR: 758M1D57M253I8M252I9M742I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T12C8C13
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1622. Stable id: NM_013994.2, RefSeq accession: NM_013994.2 CIGAR: 758M1D58M666I6M218I10M737I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T17T4C12
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1493. Stable id: NM_001297652.1, RefSeq accession: NM_001297652.1 CIGAR: 758M1D58M666I6M107I10M719I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T17T4C12
Imperfect match for CDS. Length: 840, match bp: 822, mismatch bp: 17, indel count: 4, total indel length: 1604. Stable id: NM_001297654.1, RefSeq accession: NM_001297654.1 CIGAR: 758M1D58M666I6M218I10M719I7M, MD: MD:Z:754T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T17T4C12
Imperfect match for CDS. Length: 8439, match bp: 8394, mismatch bp: 45, indel count: 2, total indel length: 7101. Stable id: NM_002457.3, RefSeq accession: NM_002457.3 CIGAR: 4616M7089I865M12I2958M, MD: MD:Z:172T1511G507T422T830C1181C44A23C44A0T118T18C1A3G94A27T8C1A3G61A0T68C11T79C17G30G0T2T19A23A5A3G0T0A5G0T18A12G36T2T8G66C248C62A677T1935
Imperfect match for CDS. Length: 880, match bp: 863, mismatch bp: 17, indel count: 4, total indel length: 432. Stable id: NM_002455.4, RefSeq accession: NM_002455.4 CIGAR: 10M3I5M67I14M317I14M45I837M, MD: MD:Z:1G1T1T9G5A3G4T7A1A40C12T21C6A25A38A49A46A594
Imperfect match for CDS. Length: 894, match bp: 876, mismatch bp: 17, indel count: 4, total indel length: 1493. Stable id: NM_001202523.1, RefSeq accession: NM_001202523.1 CIGAR: 812M1D58M666I6M107I10M719I7M, MD: MD:Z:808T3^C5C0A3A0A0T0G1C4G2T4C4A3A5T1T17T4C12
Imperfect match for CDS. Length: 905, match bp: 901, mismatch bp: 4, indel count: 2, total indel length: 202. Stable id: NM_001200019.1, RefSeq accession: NM_001200019.1 CIGAR: 12M150I6M52I887M, MD: MD:Z:2T0T5T11G883
Imperfect match for CDS. Length: 905, match bp: 901, mismatch bp: 4, indel count: 2, total indel length: 202. Stable id: NM_182647.2, RefSeq accession: NM_182647.2 CIGAR: 12M150I6M52I887M, MD: MD:Z:2T0T5T11G883
Imperfect match for CDS. Length: 905, match bp: 901, mismatch bp: 4, indel count: 2, total indel length: 202. Stable id: NM_000913.4, RefSeq accession: NM_000913.4 CIGAR: 12M150I6M52I887M, MD: MD:Z:2T0T5T11G883
Imperfect match for CDS. Length: 911, match bp: 906, mismatch bp: 0, indel count: 1, total indel length: 5. Stable id: NM_032790.3, RefSeq accession: NM_032790.3 CIGAR: 123M5D783M, MD: MD:Z:123^GCCCC783
Imperfect match for CDS. Length: 918, match bp: 913, mismatch bp: 5, indel count: 2, total indel length: 4809. Stable id: NM_178040.3, RefSeq accession: NM_178040.3 CIGAR: 906M658I9M4151I3M, MD: MD:Z:1T906T2T3G1C
Imperfect match for CDS. Length: 918, match bp: 913, mismatch bp: 5, indel count: 2, total indel length: 4865. Stable id: NM_001301248.1, RefSeq accession: NM_001301248.1 CIGAR: 906M658I9M4207I3M, MD: MD:Z:1T906T2T3G1C
Imperfect match for CDS. Length: 92, match bp: 78, mismatch bp: 14, indel count: 6, total indel length: 295. Stable id: NM_172367.2, RefSeq accession: NM_172367.2 CIGAR: 31M139I7M17I14M57I5M48I9M1I4M33I22M, MD: MD:Z:4C2G2A5T9T2G5A3T2A0C0G13C0T13T18
Imperfect match for CDS. Length: 9429, match bp: 9429, mismatch bp: 0, indel count: 1, total indel length: 6. Stable id: NM_002111.7, RefSeq accession: NM_002111.7 CIGAR: 51M6I9378M, MD: MD:Z:9429
Imperfect match for CDS. Length: 978, match bp: 978, mismatch bp: 0, indel count: 1, total indel length: 9. Stable id: NM_000597.2, RefSeq accession: NM_000597.2 CIGAR: 44M9I934M, MD: MD:Z:978
Imperfect match for CDS. Length: 9846, match bp: 9841, mismatch bp: 5, indel count: 3, total indel length: 4659. Stable id: NM_004667.5, RefSeq accession: NM_004667.5 CIGAR: 3576M168I10M3674I13M817I6247M, MD: MD:Z:2444C1138T9G3A1936G4311
Imperfect match for CDS. Length: 985, match bp: 985, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_001291986.1, RefSeq accession: NM_001291986.1 CIGAR: 76M3I909M, MD: MD:Z:985
Imperfect match for CDS. Length: 985, match bp: 985, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_001113182.2, RefSeq accession: NM_001113182.2 CIGAR: 76M3I909M, MD: MD:Z:985
Imperfect match for CDS. Length: 985, match bp: 985, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_001199456.1, RefSeq accession: NM_001199456.1 CIGAR: 76M3I909M, MD: MD:Z:985
Imperfect match for CDS. Length: 985, match bp: 985, mismatch bp: 0, indel count: 1, total indel length: 3. Stable id: NM_005104.3, RefSeq accession: NM_005104.3 CIGAR: 76M3I909M, MD: MD:Z:985
Imperfect match for CDS. Length: 9959, match bp: 9957, mismatch bp: 2, indel count: 1, total indel length: 284. Stable id: NM_019105.6, RefSeq accession: NM_019105.6 CIGAR: 6M284I9953M, MD: MD:Z:1470A5393T3094
Imperfect match for CDS. Length: 996, match bp: 994, mismatch bp: 2, indel count: 1, total indel length: 1405. Stable id: NM_014141.5, RefSeq accession: NM_014141.5 CIGAR: 6M1405I990M, MD: MD:Z:7C714A273
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