[ensembl-dev] problem git installation bioperl
Anne Lyle
annelyle at ebi.ac.uk
Thu Dec 18 12:46:42 GMT 2014
Hi Steve
Thanks for pointing out that git requires you to checkout a specific version - we’ll update the documentation accordingly.
Cheers
Anne
On 18 Dec 2014, at 12:43, Steve Moss <gawbul at gmail.com> wrote:
> Dear Julien,
>
> If you do the following, it should work (I notice this isn't in the docs at http://www.ensembl.org/info/docs/api/api_git.html):
>
> git clone https://github.com/bioperl/bioperl-live.git
> cd bioperl-live
> git checkout bioperl-release-1-6-1
> Cheers,
>
> Steve
>
> On 18 December 2014 at 12:07, Julien Roux <julien.roux at unil.ch> wrote:
> Dear list,
>
> I wanted to let you know that the installation of bioperl from Git (git clone https://github.com/bioperl/bioperl-live.git) seems to be missing some files, which leads to an error message when using the Ensembl API
> For example folder bioperl-live/Bio/Root/ does not include Root.pm, it includes only a script HTTPget.pm
>
> Installing from the archive at http://bioperl.org/DIST/BioPerl-1.6.1.tar.gz solved the problem since all files are included now.
>
> Regards,
> Julien
>
> --
> Julien Roux
> Marie-Curie postdoctoral fellow
> Department of Ecology and Evolution, University of Lausanne, Switzerland
> http://www.unil.ch/dee/home/menuinst/people/post-docs--associates/dr-julien-roux.html
> Tel: +41 78 700 2931
>
>
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> --
>
> Steve Moss
> about.me/gawbul
>
>
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