[ensembl-dev] VEP script Warnings
Duarte Molha
duartemolha at gmail.com
Thu Dec 12 16:21:10 GMT 2013
Perfect. Thanks John
=========================
Duarte Miguel Paulo Molha
http://about.me/duarte
=========================
On Thu, Dec 12, 2013 at 4:02 PM, John Marshall <jm18 at sanger.ac.uk> wrote:
> On 12 Dec 2013, at 10:29, Will McLaren wrote:
> > These are not typos; Eclipse warns because VEP is setting a
> package-specific variable and Eclipse can't see that it is used within the
> relevant package - it only sees within the current open file. I have the
> same warnings in my IDE.
>
> There's a number of possible workarounds, but perhaps the least obtuse
> would be to temporarily suppress this warning in these two places:
>
> {
> no warnings 'once';
> # copy to Slice for offline sequence fetching
> $Bio::EnsEMBL::Slice::config = $config;
> }
>
> Cheers,
>
> John
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