[ensembl-dev] Typo in VEP documentation

[Denise Carvalho-Silva]

Hi Duarte,

Thanks for bringing this to our attention and sorry for the late reply.

We will fix this as soon as possible to have the correct name for the
human assembly.

Kind regards,
Denise

> Hi Guys
>
> Anyone seen this report? I am sure it is not very important but it is
> bound
> to cause issues for some users.
>
> Best regards
>
> Duarte
>
>
> =========================
>      Duarte Miguel Paulo Molha
>          http://about.me/duarte
> =========================
>
>
> On Fri, Dec 6, 2013 at 1:41 PM, Duarte Molha <Duarte.Molha at ogt.com> wrote:
>
>> Dear developers
>>
>>
>>
>> I found a typo in the documentation of VEP at:
>> http://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre
>>
>>
>>
>> wget
>> ftp://ftp.ensembl.org/pub/release-74/fasta/homo_sapiens/dna/Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz
>>
>> gzip -d Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz
>>
>> perl variant_effect_predictor.pl -i input.vcf --offline --hgvs --fasta
>> Homo_sapiens.GRCh27.74.dna.primary_assembly.fa
>>
>>
>>
>> I believe the fasta file should be :
>> Homo_sapiens.GRCh37.74.dna.primary_assembly.fa.gz
>>
>>
>>
>>
>> Best regards
>>
>>
>>
>> Duarte Molha
>>
>>
>>
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-- 
Denise Carvalho-Silva, PhD
Ensembl Outreach Officer
EMBL-EBI
Hinxton Cambs UK
CB10 1SD
www.ensembl.org | www.ensemblgenomes.org
uk.linkedin.com/in/denisecs/