[ensembl-dev] Species metadata file ("assembly" or "assembly_accession" labels) to species ftp paths mapping

Allan Kamau kamauallan at gmail.com
Thu Jul 10 06:49:45 BST 2025


Greetings,

Given an entry from one of the species metadata files such as "
ftp.ensemblgenomes.org/pub/plants/release-60/species_EnsemblPlants.txt" I
would like to determine the ftp path to the "gtf" data of the given species.

Is there such a mapping file or mechanism that I can use?

Or in short if I have an "assembly" value such as "ASM16007v2" or and an
"assembly_accession" label for example "GCA_000160075.2" is there a way to
determine the ftp path to the gtf data which is "
tp.ensemblgenomes.org/pub/release-60/bacteria/gtf/bacteria_118_collection/abiotrophia_defectiva_atcc_49176_gca_000160075"
in this case?

Regards,
- Allan.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20250710/7a3ff6d9/attachment.html>


More information about the Dev mailing list