[ensembl-dev] JSON data on FTP
Sebastien Moretti
sebastien.moretti at unil.ch
Tue Sep 10 10:56:17 BST 2024
Hi
I have just found the Ensembl data in the JSON format on your FTP and
have several questions and comments.
- How complete are those JSON files? Are they, kind of, a dump for each
species database?
- Will those JSON files stay for long? Are they released now with each
new Ensembl version?
- Do Ensembl Genomes provide the same JSON?
- What kind of checksum is provided with each JSON file (the CHECKSUMS
file)?
Data in JSON are not mentioned on
https://www.ensembl.org/info/data/ftp/index.html but in the species
table, without description.
They are also not described in https://ftp.ensembl.org/pub/current_README
Best
P.S. there is a typo in https://ftp.ensembl.org/pub/current_README
Should be *see http://ensembl.org/* instead of *see http;//ensembl.org/*
--
Sébastien Moretti
Staff Scientist
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221
https://bioinfo.unil.ch/ https://www.bgee.org/ https://selectome.org/
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