[ensembl-dev] Ancestral alleles information

[Murillo Rodrigues]

Hi,

I noticed that Ensembl publishes ancestral alleles for a few species, e.g. https://ftp.ensembl.org/pub/release-112/fasta/ancestral_alleles/

These are calculated based on EPO alignments that are built for subsets of species.

How does Ensembl decide which species to call ancestral alleles for? Can we request new species be added? Can I run the ancestral allele pipeline for my own species/EPO alignment of choice?

Thank your for the help!

Murillo
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