[ensembl-dev] Species meta data on rapid [EXT]

[Michael Paulini]

Hi John,

There was a rapid release on the 17th of July, which included things like Acrobasis consociella / GCA_963555685.1
It looks ike all new ones haven’t been included in the file (as it is from the 8th).

I appended a bit to show what I mean.

Greetings,

Michael

As example:

mib118490s:tmp mh6$ wget https://ftp.ensembl.org/pub/rapid-release/species_metadata.json
--2024-07-22 11:07:30--  https://ftp.ensembl.org/pub/rapid-release/species_metadata.json
Resolving ftp.ensembl.org (ftp.ensembl.org)... 193.62.193.169
Connecting to ftp.ensembl.org (ftp.ensembl.org)|193.62.193.169|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 861592 (841K) [application/json]
Saving to: ‘species_metadata.json’

species_metadata.json                                           100%[=======================================================================================================================================================>] 841.40K  --.-KB/s    in 0.1s

2024-07-22 11:07:30 (6.91 MB/s) - ‘species_metadata.json’ saved [861592/861592]

mib118490s:tmp mh6$ grep GCA_963555685.1 species_metadata.json
mib118490s:tmp mh6$ grep Acrobasis_consociella_GCA_963555685.1 species_metadata.json
mib118490s:tmp mh6$ grep Acrobasis species_metadata.json
      "species" : "Acrobasis repandana",
      "species" : "Acrobasis suavella",
      "species" : "Acrobasis suavella",


On 22 Jul 2024, at 10:54, John Tate <jgt at ebi.ac.uk> wrote:

Hi Michael,

Could it be that the https://ftp.ensembl.org/pub/rapid-release/species_metadata.json [ftp.ensembl.org]<https://urldefense.proofpoint.com/v2/url?u=https-3A__ftp.ensembl.org_pub_rapid-2Drelease_species-5Fmetadata.json&d=DwMFaQ&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=dlKDUfCS4BkNAxVmG7MDyU6N7Vlg2I7v-PtmkCotvMo&m=DjwEFZ_egaksW12-K0-TqsFUfdSqVHKiQ48anEk9Zt-wmGA2JHxuEpJr3HM7VDwM&s=N1YKX5zLbudJhTcSpRfHHL0MDXoaefVvTK4gC5PXJeY&e=> hasn’t been updated in the last rapid release from the 17th ?

The release files like the species metadata JSON dump were generated on 7 July and copied to the FTP area on 8 July, but updating the website itself took a little longer this time, hence the lag between the dates. The JSON file should be up to date with the website, but please do let us know if you find any discrepancy.

Cheers,

John.

--
John Tate
e: jgt at ebi.ac.uk
a: European Bioinformatics Institute (EMBL-EBI), CB10 1SD, UK

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