[ensembl-dev] MANE Select/Canonical transcript not found in VEP result

Wallace Ko myko at l3-bioinfo.com
Fri Jan 19 04:29:06 GMT 2024


Dear Ensembl Development Team,

In Ensembl website for the gene GNAS (
https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000087460;r=20:58839718-58911192),
the transcript table show the record ENST00000371085.8 with MANE Select
flag.

However, in VEP result (from version 111 with cache) or web (
https://www.ensembl.org/Homo_sapiens/Tools/VEP/Ticket?tl=WAAIGImXnul0ZVhG)
for the variant rs1800900, the result for ENST00000371085 cannot be found.
Would there be something wrong with VEP v111 or the cache itself?

Regards,
Wallace Ko
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