[ensembl-dev] Unable to get All Annotations in REST API
e259345
sana.basharat at metu.edu.tr
Sun Jan 14 19:46:23 GMT 2024
Hello,
I'm trying to use Ensembl VEP as part of my Masters thesis project where
I'm building a Python package that will annotate my data using Ensembl
VEP as well as other tools and then feed it to a model to predict an
outcome. I'm using the GrCH37 assembly.
Initially, I was using the web version of Ensembl VEP manually to get
annotations, but now, I want to use the REST API to integrate the
Ensembl VEP annotation part into my code.
But upon looking at the Ensembl Rest API endpoints [1] and testing them
out, I cannot seem to find most of the annotations that the web version
was providing me with, namely SpliceAI, ada_score, rf_score, LOEUF, ENSP
terms, GO terms and UNIPARC terms. Is it because these are plugins?
Can you please let me know if these annotations are provided within the
REST API, and if so, which endpoints I can use to get them?
Thank you so much for your time and your effort.
Best regards,
Sana Basharat
Masters student (Data Informatics)
Middle East Technical University
Ankara, Turkiye
Links:
------
[1] https://rest.ensembl.org/
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