[ensembl-dev] Python Script to read emf dump files?

Omar Gamel omar.gamel at utoronto.ca
Thu Mar 2 18:21:18 GMT 2023


Hello,

I am looking for a python package or script that can parse the alignment
emf files in the ENSEMBL FTP dump into an object I can manipulate
Example files here:
https://ftp.ensembl.org/pub/current_emf/ensembl-compara/multiple_alignments/90_mammals.epo_extended/
I am particularly interested in the GERP data along with the alignment.

I see the example scripts provided are largely in perl:
https://github.com/Ensembl/ensembl-compara/tree/release/109/scripts/dumps

Please let me know where I can find such a python resource.

Thank you
Omar
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