[ensembl-dev] Gene VARS mysteriously moved from CHR_HSCHR6_MHC_APD_CTG1 to HSCHR6_MHC_APD_CTG1 in release 110

Hervé Pagès hpages.on.github at gmail.com
Wed Aug 23 06:30:11 BST 2023


Hi,

Looks like starting with Ensembl 110 (now based on GRCh38.p14), human 
gene ENSG00000231116 (VARS) is now reported to be located on sequence 
HSCHR6_MHC_APD_CTG1 after being reported to be on sequence 
CHR_HSCHR6_MHC_APD_CTG1 for many years (at least since Ensembl release 
85, based on GRCh38.p7).

Anybody knows what sequence CHR_HSCHR6_MHC_APD_CTG1 was actually 
supposed to be? Was never a valid GRCh38 sequence name. At least the new 
sequence name belongs to GRCh38.

Thanks,

H.

-- 
Hervé Pagès

Bioconductor Core Team
hpages.on.github at gmail.com
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