[ensembl-dev] Transcripts missing in Mus_musculus.GRCm38.102.gtf.gz and Mus_musculus.GRCm38.102.gff3.gz

[Hervé Pagès]

Hi,

Does anybody know why transcript ENSMUST00000230762 is missing from the 
GTF and GFF3 files for Mus musculus in Ensembl release 102?

ENSMUST00000230762 is a transcript present in the 
mus_musculus_core_102_38 db. It's located on novel-patch sequence 
CHR_WSB_EIJ_MMCHR11_CTG3 from GRCm38.p6. But for some reason it's not in 
the Mus_musculus.GRCm38.102.gtf.gz or Mus_musculus.GRCm38.102.gff3.gz 
files found here 
http://ftp.ensembl.org/pub/release-102/gtf/mus_musculus/ and here 
http://ftp.ensembl.org/pub/release-102/gff3/mus_musculus/

Furthermore, it seems that the GTF and GTF3 files are missing 2079 
transcripts compared to the mus_musculus_core_102_38 db. Anybody knows 
what's going on?

Thanks,
H.

-- 
Hervé Pagès

Bioconductor Core Team
hpages.on.github at gmail.com