[ensembl-dev] Ensembl4J

LAW Andy andy.law at roslin.ed.ac.uk
Mon Feb 1 10:49:22 GMT 2021


If only there were funding...

http://jensembl.sourceforge.net/

Later,

Andy


On 1 Feb 2021, at 10:24, Andy Yates <ayates at ebi.ac.uk<mailto:ayates at ebi.ac.uk>> wrote:

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Hi Danny,

Ensembl continues to be primarily a Perl based project but there is growing development in Python and JavaScript, which will continue to increase over the coming years.

Andy

------------
Andrew Yates - Genomics Technology Infrastructure Team Leader
The European Bioinformatics Institute (EMBL-EBI)
Wellcome Genome Campus
Hinxton, Cambridge
CB10 1SD, United Kingdom
Tel: +44-(0)1223-492538
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http://www.ensembl.org/

On 30 Jan 2021, at 17:42, <danny.kunz at gmx.de> <danny.kunz at gmx.de> wrote:

Hi Andy,

thanks for the response.

Don't worry, we have enough capacity to maintain what we need for our use cases.

If any feature requests for other api parts should come up in the future, we will see then at that point of time how we can distribute the work better or how we can attract more contributors...

As you have shown interest of the project being maintained and being available for consumers, I will enhance the documentation a little and will publish it to the maven central in the next weeks.

Just out of curiosity, if the java expertise of the ensembl teams has diminished in the last years, on which languages are you operating your pipelines and platforms?

Best regards,
Danny

-----Ursprüngliche Nachricht-----
Von: Dev <dev-bounces at ensembl.org> Im Auftrag von Andy Yates
Gesendet: Mittwoch, 27. Januar 2021 12:04
An: Ensembl developers list <dev at ensembl.org>
Betreff: Re: [ensembl-dev] Ensembl4J

Dear Danny,

We certainly support that you’ve developed the API and have made it available under an open source license. We also hope you can find others to help maintain the codebase, however Ensembl’s Java expertise* has diminished over the past years and is one of the reasons why we cannot offer our help to maintain this. We will continue to advertise any pending changes to our REST API and FTP site via our pre-release blog posts and attempt to minimise disruption to both of these resources.

Best regards,

Andy

* Ensembl did maintain a number of projects written in Java but these have been either retired or replaced over the past 10 years

------------
Andrew Yates - Genomics Technology Infrastructure Team Leader The European Bioinformatics Institute (EMBL-EBI) Wellcome Genome Campus Hinxton, Cambridge
CB10 1SD, United Kingdom
Tel: +44-(0)1223-492538
Fax: +44-(0)1223-494468
Skype: andy.yates.ebi
http://www.ebi.ac.uk/
http://www.ensembl.org/

On 26 Jan 2021, at 10:50, <danny.kunz at gmx.de> <danny.kunz at gmx.de> wrote:

Hi all,

I have a quick question:

We developed for our rare disease research some java based open source libraries including a first prototype for the ensembl REST API and FTP access.

Is there any interest from ensemble org side, that the java open source library “Ensembl4J” is maintained in the future?

https://github.com/omnaest/Ensembl4J

Best regards,
Danny Kunz
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