[ensembl-dev] Motif feature consequences discrepancy

Thu Mar 12 12:53:52 GMT 2020

Hi,

I am using VEP r99 to annotate i.e. rs759323910, and I notice that VEP only annotates MotifFeature ENSM00524563717 (ENSPFM0379).

The web browser does hower annotate 2 MotifFeatures ENSM00524563717 (ENSPFM0588) and ENSM00489900360 (ENSPFM0379).

See:

http://www.ensembl.org/Homo_sapiens/Variation/Mappings?db=core;v=rs759323910;vdb=variation

Is there any valid reason for this discrepancy or is this a bug in VEP r99?

Best regards,

Sigurjon A. Gudjonsson

Bioinformatics Group

Decode Genetics
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