[ensembl-dev] alternatives

Joseph Steinberger joseph.steinberger at weizmann.ac.il
Tue Feb 11 05:19:04 GMT 2020


Dear Community,

I would like to experiment with using flat files instead of the MySQL database.

Which combination of species flatfiles is the equivalent of the species mysql core database?
Do the species gff3 and fasta files exactly correspond to the species mysql core database  -
meaning, is all the data that is contained in the mysql core database, also contained in the combination of the gff3 and fasta files?

Sincerely,
Yossi
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