[ensembl-dev] Refseq cache file

Duarte Molha duartemolha at gmail.com
Thu Apr 16 17:01:20 BST 2020


Dear Devs


I was wondering if you could help me with the source of the cache data for
VEP


ON this link
https://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html


you list the refseq source of the transcripts used to this file:




*2019-06-28(GCF_000001405.39_GRCh38.p13_genomic.gff)*

This is great but I am interested in also getting the correct source for
the hg19 version


You have simply listed it as :


*2015-01*

And I have not been able to match this date to any of the GCF files

The latest I could find for GRCh37 is

https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25/

but this file dates to   2013/06/28

Can you please point me where I can get the 2015-01 refseq GFF source file
you have used for the cache?

Best regards

Duarte
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20200416/110902ba/attachment.html>


More information about the Dev mailing list