[ensembl-dev] Bug in Ensembl 100 BioMart - UCSC Stable ID
danhornt at njhealth.org
Wed Apr 29 23:54:24 BST 2020
Just wanted to add that the issue only occurs in the "Ensembl Genes 100"
database (for both human & mouse; I don't think any other genomes have
UCSC IDs as an option), but not in the "Mouse strains 100" data (I
checked a couple of strains, including C57BL/6NJ, all of which had
regular UCSC IDs).
On Wed, 29 Apr 2020, Thomas Danhorn wrote:
> Dear Developers,
> Congratulations to the 100th realease! I was just downloading gene data from
> the BioMart of the new release 100 and discovered that when selecting "UCSC
> Stable ID", the IDs are in fact identical to Ensemble "Transcript stable ID
> version", and not UCSC IDs as I would have expected. Please let me know when
> that gets fixed.
> Thank you very much,
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