[ensembl-dev] Bug in Ensembl 100 BioMart - UCSC Stable ID

Thomas Danhorn danhornt at njhealth.org
Wed Apr 29 23:54:24 BST 2020

Just wanted to add that the issue only occurs in the "Ensembl Genes 100" 
database (for both human & mouse; I don't think any other genomes have 
UCSC IDs as an option), but not in the "Mouse strains 100" data (I 
checked a couple of strains, including C57BL/6NJ, all of which had 
regular UCSC IDs).



On Wed, 29 Apr 2020, Thomas Danhorn wrote:

> Dear Developers,
> Congratulations to the 100th realease!  I was just downloading gene data from 
> the BioMart of the new release 100 and discovered that when selecting "UCSC 
> Stable ID", the IDs are in fact identical to Ensemble "Transcript stable ID 
> version", and not UCSC IDs as I would have expected.  Please let me know when 
> that gets fixed.
> Thank you very much,
> Thomas
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