[ensembl-dev] Ensembl Gene ID of Motif Feature

Anja Thormann anja at ebi.ac.uk
Wed Apr 29 12:47:32 BST 2020

Dear Souhila,

we don’t have any information about the gene that is regulated by a given motif feature if that is what you were after. Please let me know if that is not the case. VEP returns gene IDs for variants which overlap transcripts.

Best regards,

> On 27 Apr 2020, at 16:35, Souhila Amanzougarene <souhila.amanzougarene at cnrs.fr> wrote:
> Hi Ensembl Developers,
> I used VEP to annotate vcf files, I'm interested by the MotifFeature. In the annotated file, I have only the ensembl motif ID (Feature column). 
> Is there any way to get gene ID in addition of the ensembl motif ID.
> Best regards
> -- 
> Souhila Amanzougarene
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