[ensembl-dev] VEP - Annotation of Biallelic VCFs
Nicolas.Thierry-Mieg at univ-grenoble-alpes.fr
Wed Apr 29 09:29:17 BST 2020
depending on what problem you are trying to solve, --allele_number might
On 4/27/20 7:18 PM, Anja Thormann wrote:
> Dear Margret,
> if you want to annotate genotype data you need to use the
> individual(*) option. VEP will annotate only alternate alleles that are
> present in the genotypes of the specified individuals.
> Best regards,
>> On 24 Apr 2020, at 22:16, Linan, Margaret <margaret.linan at mssm.edu
>> <mailto:margaret.linan at mssm.edu>> wrote:
>> Hi –
>> How does VEP handle VCFs with biallelic variants? Do you recommend
>> any command line options for this type of data?
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