[ensembl-dev] VEP - Annotation of Biallelic VCFs
anja at ebi.ac.uk
Mon Apr 27 18:18:59 BST 2020
if you want to annotate genotype data you need to use the individual(*) option. VEP will annotate only alternate alleles that are present in the genotypes of the specified individuals.
> On 24 Apr 2020, at 22:16, Linan, Margaret <margaret.linan at mssm.edu> wrote:
> Hi –
> How does VEP handle VCFs with biallelic variants? Do you recommend any command line options for this type of data?
> Dev mailing list Dev at ensembl.org <mailto:Dev at ensembl.org>
> Posting guidelines and subscribe/unsubscribe info: https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org <https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org>
> Ensembl Blog: http://www.ensembl.info/ <http://www.ensembl.info/>
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the Dev