[ensembl-dev] issue retrieving dbNSFP data via VEP Rest API

Johann Lieberwirth johann.lieberwirth at web.de
Fri Apr 17 15:24:59 BST 2020

Hi everybody,

I’m working on a tool using annotation data from the Ensenmbl VEP Rest API part of which is retrieving prediction & conservation scores of the dbNSFP database.

My query GET request looks like this:

http://grch37.rest.ensembl.org/vep/human/region/2:46803383:46803383/A?&dbNSFP=MutationTaster_score,MutationTaster_pred,Polyphen2_HDIV_score,GERP++_RS,GERP++_RS_rankscore&content-type=application/json <http://grch37.rest.ensembl.org/vep/human/region/2:46803383:46803383/A?&dbNSFP=MutationTaster_score,MutationTaster_pred,Polyphen2_HDIV_score,GERP++_RS,GERP++_RS_rankscore&content-type=application/json>

I receive a .json containing most of the requested data, but not the ones from dbNSFP.

Can somebody tell me how to change it in order to get everything I need?

Thanks a lot,
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20200417/8e72e4ae/attachment.html>

More information about the Dev mailing list