[ensembl-dev] VEP: Perform lift over

Linan, Margaret margaret.linan at mssm.edu
Wed Apr 8 17:59:28 BST 2020


Can I get a example script for using command line VEP to convert a hg19 VCF file to a VCF with GRCh38 coordinates?
Also is it possible to include the coordinates from hg19 in the GRCh38 lifted VCF file?

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