[ensembl-dev] VEP command line

[Linan, Margaret]

Hi -


Does anyone know how the VEP command line program's stats_html utility calculates the following (i.e., what VCF columns and operations it uses)?

- VCF file pre-processing

- Number of overlapped genes

- Number of overlapped transcripts

- Number of overlapped regulatory features


Thank you,

Margaret
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