[ensembl-dev] VEP per-allele --variant_class...

Irina Armean iarmean at ebi.ac.uk
Fri Mar 29 11:22:44 GMT 2019

Hi Joey,

thanks for the mail and the suggestion. Indeed currently the assigned 
variant_class is not allele specific.

We will look into providing this in the future.

Thanks again for your mail,


On 28/03/2019 17:42, Joseph A Prinz wrote:
> Hi VEP devs,
> I was wondering if you might be able to make a per-allele version of --variant_class?
> Currently, as I understand it, one variant class is given for all alleles called of a VCF record.
> This can be confusing if multiple conflicting classes are actually called.
> It would be nice if there was an analogue to 'allele_string' that listed a classes for each allele called.
> Thank you for your consideration!
> Joey
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