[ensembl-dev] The European Variation Archive RefSNP preview release
bkoylass at ebi.ac.uk
Tue Jun 11 10:37:01 BST 2019
Dear Ensembl team
The European Variation Archive has been in the process of importing all
non-human RefSNP (RS) accessioned variants from dbSNP
The EVA is now happy to announce the preview of the first RefSNP
release, which includes RS accessioned variants from species such as
mouse, pig, fruitfly, zebrafish, arabidopsis and more. Before the
official release is made public, we wanted to select a number of
individuals whose species of interest is included in the first release,
and provide them access to these files to determine their functionality
and suggest improvements.
The release will consist of a collection of files organised by species
that list all the RS IDs for variants stored in the European Variation
Archive. The files include current RS accessioned variants in use,
deprecated IDs, as well as unmapped variants. They can all be found here:
More information regarding the format of the general release can be
found in the ""README_general_info.txt"", while species specific
information can be found in ""README_species_issues.txt"".
Please do take a look at the files for your species of interest. We hope
the variants included, as well as the format they are presented in are
As we intend to make these releases at regular intervals, any comments
or suggestions would be greatly appreciated.
Feedback can be provided using the short survey:
Many thanks for your time and effort and we look forward to hearing any
comments you may have.
The European Variation Archive
European Bioinformatics Institute (EMBL-EBI)
Hinxton, Cambridgeshire, CB10 1SD, UK
E: Bkoylass at ebi.ac.uk
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the Dev