[ensembl-dev] biomaRt ListEnsemblArchives

ARMANT Olivier olivier.armant at irsn.fr
Mon Dec 16 13:55:11 GMT 2019


Dear Ensembl dev list,

First thanx for you great job !

I use the R package biomaRt R version 3.6.1 (2019-07-05) -- "Action of the Toes"
to query ensembl on a debian system Ubuntu 18.04.3 LTS
I can sucessfully connect to the current version of the assembly :
> listMarts()
               biomart               version
1 ENSEMBL_MART_ENSEMBL      Ensembl Genes 98
2   ENSEMBL_MART_MOUSE      Mouse strains 98
3     ENSEMBL_MART_SNP  Ensembl Variation 98
4 ENSEMBL_MART_FUNCGEN Ensembl Regulation 98

But this fail when I try to connect to archives :
> listEnsemblArchives()
Error: failed to load HTTP resource

Your help and suggestion would be very much appreciated


Olivier ARMANT
IRSN/LECO
Cadarache
FRANCE
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