[ensembl-dev] Question about using Ensembl Perl API to fetch gene by ensembl_stable_id_version

張東涵 a29644972 at gmail.com
Fri May 4 11:43:46 BST 2018


Hi,

I have a question about using Ensembl Perl API.
I couldn't use "fetch_by_stable_id_version" to fetch gene by old stable ID.

For example,
I couldn't use "fetch_by_stable_id_version" (ENSG00000167578.15) to get
information of gene.

error message :
Can't call method "get_all_DBEntries" on an undefined value at
./test_ensembl_query line 43, <STDIN> line 60483.
ENSG00000167578 15


1.How can I get information of ENSG00000167578.15(old stable id) by Ensembl
Perl API ?

2. How can I get ID History score about associated archived IDs for this
stable ID version by Ensembl Perl API?

https://asia.ensembl.org/Homo_sapiens/Gene/Idhistory?g=ENSG0
0000167578;r=19:40778216-40796938



Thanks

=============================
Tung-Han Chang, research student
Institute of biomedical informatics , National Yang-Ming University
No.155, Sec.2, Linong Street, Taipei, 112 Taiwan
=============================
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