[ensembl-dev] Question involving MSU6 build file

[Michael Friedman]

> Ensemble Dev forum team,
>
> I have been running through several transcriptomic analyses using various
> platforms and wanted to verify a particular genome build I have been using.
> I know this project is no longer funded but if you could enlighten me as to
> which build the following metadata provided me, that would be extremely
> fruitful.
>
> ensembl species production name - oryza_sativa
> ensembl species divison - EnsemblPlants
> ensembl species taxonomy id - 39947
> ensembl  scientific name - Oryza sativa
> ensembl species common name - Japonica rice
> ensembl genebuild method - imported from MSU
> ensembl gnebuild version - 2009-01-MSU6
> ensembl assembly name - MSU6
> ensembl provider name - MSU
> ensembl assembly date - 2009
>
> After referencing some of your files, I think this is build 6.0. Is this
> correct? Their reference files can be found at the following: http://rice.
> plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/
> pseudomolecules/
>
> Thanks,
>
> Michael
>
>
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