[ensembl-dev] Biomart scerevisiae_paralog_paralogy_confidence attribute missing?
muffato at ebi.ac.uk
Mon Jun 4 15:51:07 BST 2018
Indeed we don't compute the "high-confidence" flag on paralogues. Of
what we do for orthologues, only the threshold on the percentage of
sequence identity / coverage could apply to paralogues, but we haven't
looked at identifying sensible thresholds.
On 01/06/18 15:42, Greg Slodkowicz wrote:
> I've been using the biomaRt R package to obtain paralogs for yeast and
> noticed that I'm getting the value of NA for
> the scerevisiae_paralog_paralogy_confidence attribute in all cases. I
> was wondering why that is and if there's any way to identify the more
> reliable paralog predictions?
> Many thanks,
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